Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d07
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78415-9|CAI58633.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical pr...    29   2.2  
EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short i...    29   2.2  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    29   2.2  
AY912076-1|AAX81408.1|  685|Caenorhabditis elegans extracellular...    29   2.2  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    29   2.2  
AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhes...    29   2.2  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    29   2.2  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    29   3.8  
U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical
           protein F07C4.6 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 154 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 62
           TCG  C +STY   N  +P LNC  +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135


>Z78415-9|CAI58633.1|  685|Caenorhabditis elegans Hypothetical
           protein C17G1.6b protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 201 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 323
           C D    +V+ KY    + +GARL  S P+ +  +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436


>Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical
           protein C17G1.6a protein.
          Length = 765

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 201 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 323
           C D    +V+ KY    + +GARL  S P+ +  +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436


>EF584656-1|ABQ57414.1|  500|Caenorhabditis elegans LAD-2 short
           isoform protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 117
           H   Y  F  +IF TA   L +K+ LR+  LEH P+R
Sbjct: 98  HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
           isoform protein.
          Length = 1187

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 117
           H   Y  F  +IF TA   L +K+ LR+  LEH P+R
Sbjct: 98  HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131


>AY912076-1|AAX81408.1|  685|Caenorhabditis elegans extracellular
           matrix metalloproteaseprotein.
          Length = 685

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 201 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 323
           C D    +V+ KY    + +GARL  S P+ +  +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
           domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 117
           H   Y  F  +IF TA   L +K+ LR+  LEH P+R
Sbjct: 98  HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131


>AC024817-51|AAP68914.1|  496|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform b protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 117
           H   Y  F  +IF TA   L +K+ LR+  LEH P+R
Sbjct: 98  HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 117
           H   Y  F  +IF TA   L +K+ LR+  LEH P+R
Sbjct: 98  HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 151 CGFPC-SSTYLSVNVSWPNLNCPILT 77
           CG  C +S+Y   NV++P LNC  +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130


>U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical
           protein F11D5.3b protein.
          Length = 767

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 228 PRVCLQRLYNFHILNCW 178
           PR+C  +LYN  IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738


>U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical
           protein F11D5.3a protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 228 PRVCLQRLYNFHILNCW 178
           PR+C  +LYN  IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768


>U97592-4|AAB52872.1|  450|Caenorhabditis elegans Hypothetical
           protein C14A11.5 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
 Frame = +3

Query: 192 YGNCKDAVSRHVDKKYKYTYSESGARLPPSAP-NSVAKQGDPLYLQPHTVLITKSGVIQL 368
           YGNCK+++   V++KY   + +    L      +S + + +  + +   + + K+ +++ 
Sbjct: 322 YGNCKESIRSRVEEKYNQLFIDRIRELTEKLEWSSESPEKNRQFTKTDELTVVKAHIVRK 381

Query: 369 I---MKSKLPYA---IELQEWLLEEVIPQV 440
           +    KS  P A    E+ + L E+  P +
Sbjct: 382 LDYWKKSTQPQAAHYTEMYQLLFEKCGPSI 411


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 199 FPYFKLLAMSLATNLTCGFPCSSTYLSVNVSW 104
           FPY++ L     TNLTC    +S ++ VNVS+
Sbjct: 241 FPYYEYLCTHYWTNLTC---YTSIFVFVNVSF 269


>Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical
           protein F46G10.2 protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 195 GNCKDAVSRHVDKKYKYTYSESGARLPPSAPNS-VAKQGDPLYLQPHTVLITKSGVIQLI 371
           G C       +  K K+    S A++ P AP S  A   + L L P  +    +GV+ L+
Sbjct: 292 GGCACVNCNCITDKTKFFVIPSLAKVTPPAPTSPTAVHHETLILSPLQIFFIFTGVVSLL 351

Query: 372 M 374
           +
Sbjct: 352 L 352


>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 568 FFCATTACSAFVCSVNVAISLVTNCLFFSSCCLIAGSYLPVHST 437
           F C T   S F C+         + L FS+CC I G +   HST
Sbjct: 23  FECVTLLKSVF-CARKKKKRFFLSFLSFSTCCSILGWFFLSHST 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,217
Number of Sequences: 27780
Number of extensions: 302035
Number of successful extensions: 951
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)