Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d01
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)                     29   1.2  
SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)                     27   6.2  
SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  
SB_36346| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_51528| Best HMM Match : 7tm_1 (HMM E-Value=1.4)
          Length = 205

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 134 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 250
           KLTY+A   +G      +S  R LGK  V     +KRLS
Sbjct: 147 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 185


>SB_49231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 134 KLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLS 250
           KLTY+A   +G      +S  R LGK  V     +KRLS
Sbjct: 138 KLTYIAGGQEGADGMTGLSSNRMLGKGFVLEKNTVKRLS 176


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +1

Query: 127 RSQVDVCGTEERRYSPKTTDFKGPQAGQV*RVRHDFIETLKFSYIHV 267
           R+++ +C    RR+   T+  KGP   +  R + DF+  +   ++ +
Sbjct: 59  RTRIRLCSFAARRFPCGTSHAKGPGKYETWRTKKDFLAKVNIVFVEL 105


>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +2

Query: 86  IMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 265
           ++ +  ++TY K +    + + + N G+P  LQ S         V A     +LS P+ +
Sbjct: 550 LVTQGAHSTYSKCHTGSPSDLQVSNTGSPFDLQFSNTGSPFNLQVTAGIDCDKLSAPVMS 609

Query: 266 SCPNIKNETIVQH 304
             P    + I +H
Sbjct: 610 LIPTDPGQPIDEH 622


>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
          Length = 523

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 248 SFPIYT-SCPNIKNETIVQHRKCHV*SMCILQ*KHFYLKKK 367
           ++P Y  +CP  + ET+VQ     V  +CIL   H Y  KK
Sbjct: 3   AWPAYRRNCPIDETETVVQWASLVVNGLCIL--LHLYRAKK 41


>SB_5300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 92  EKNNYNTYYKMYDRKLTYVAL 154
           E+NN N  Y+M + KLT++ L
Sbjct: 129 EENNINNIYQMNNLKLTFIRL 149


>SB_36346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 200 CGPLKSVVFGEYRRSSVPHTSTC 132
           CGP K  +F       +PH STC
Sbjct: 33  CGPNKCCLFNRICSPKLPHYSTC 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,286
Number of Sequences: 59808
Number of extensions: 190972
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)