Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d01
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    33   0.063
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    26   7.2  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    26   7.2  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    26   7.2  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    26   7.2  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    26   9.5  
AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 33.1 bits (72), Expect = 0.063
 Identities = 24/83 (28%), Positives = 33/83 (39%)
 Frame = +2

Query: 62  SDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLK 241
           S  C MR    +  Y    K   R+   +      TP+  ++S    + K       L K
Sbjct: 98  SSKCVMRA---REQYKVQRKWQPRRPAAIPTTTVKTPKLKKLS----IKKVEAMRKALPK 150

Query: 242 RLSFPIYTSCPNIKNETIVQHRK 310
            L FP  T  P I+NE  +Q RK
Sbjct: 151 ELQFPTATEVPKIRNEVKIQARK 173


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 170  PRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 265
            PRK++I  G  +G +  Y +   K+ ++ +YT
Sbjct: 3852 PRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 170  PRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 265
            PRK++I  G  +G +  Y +   K+ ++ +YT
Sbjct: 3852 PRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 170  PRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 265
            PRK++I  G  +G +  Y +   K+ ++ +YT
Sbjct: 3852 PRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 170  PRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 265
            PRK++I  G  +G +  Y +   K+ ++ +YT
Sbjct: 3852 PRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 8   CVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDR 133
           CV LC   C  L+ +  L DD  M +  +  +   +Y  YD+
Sbjct: 720 CV-LCAPGCFSLFRASALMDDNIMHKYTKTASEPRHYVQYDQ 760


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 8   CVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDR 133
           CV LC   C  L+ +  L DD  M +  +  +   +Y  YD+
Sbjct: 720 CV-LCAPGCFSLFRASALMDDNIMHKYTKTASEPRHYVQYDQ 760


>AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical
           protein W03G9.2 protein.
          Length = 515

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 179 VFGEYRRSSVPHTSTCDRTFYNTYCSY 99
           VF +YR+     TS CD  F N   +Y
Sbjct: 65  VFKKYRQEIADKTSRCDAQFINNLHTY 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,679
Number of Sequences: 27780
Number of extensions: 151376
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)