Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6c20
(493 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 241 4e-63
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 146 2e-34
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 144 9e-34
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 107 1e-22
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 107 2e-22
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 103 2e-21
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 103 3e-21
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 98 1e-19
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 98 1e-19
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 96 3e-19
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 95 6e-19
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 94 1e-18
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 93 2e-18
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 93 3e-18
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 89 4e-17
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 89 5e-17
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 87 2e-16
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 83 4e-15
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 80 3e-14
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 73 3e-12
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 3e-08
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 59 6e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 52 7e-06
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 51 2e-05
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 49 7e-05
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 44 0.002
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 44 0.002
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 42 0.006
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 39 0.070
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 37 0.21
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 36 0.37
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 36 0.49
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 35 1.1
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 1.5
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 34 1.5
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 34 2.0
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 33 2.6
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 33 2.6
UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=... 33 3.5
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 33 4.6
UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A membe... 33 4.6
UniRef50_UPI0000DBF3A8 Cluster: UPI0000DBF3A8 related cluster; n... 32 6.0
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 6.0
UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; ... 32 8.0
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 8.0
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 241 bits (591), Expect = 4e-63
Identities = 115/129 (89%), Positives = 124/129 (96%)
Frame = +1
Query: 73 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 252
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 253 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHAR 432
P+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFL RRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 433 ILIRQRHIR 459
+LIRQRHIR
Sbjct: 128 VLIRQRHIR 136
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 146 bits (354), Expect = 2e-34
Identities = 69/127 (54%), Positives = 93/127 (73%)
Frame = +1
Query: 79 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 258
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 259 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARIL 438
RL EG ALLRRL +G+L Q KL++VL LK E+ L RRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 439 IRQRHIR 459
IR + I+
Sbjct: 129 IRGKMIK 135
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 144 bits (349), Expect = 9e-34
Identities = 74/127 (58%), Positives = 90/127 (70%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 436 LIRQRHI 456
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 107 bits (258), Expect = 1e-22
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 243
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 244 EKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKS 417
+ +FE + L+ + R G+L +D VL LK+ L RRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
Query: 418 IHHARILIRQRHI 456
AR L+ HI
Sbjct: 123 PKQARQLVTHGHI 135
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 107 bits (256), Expect = 2e-22
Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 247 KDPKRL---FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKS 417
++ + + L+ L R G+L E +D VL LK+E L RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
Query: 418 IHHARILIRQRHI 456
AR I HI
Sbjct: 123 PKQARQFITHGHI 135
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 103 bits (248), Expect = 2e-21
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Frame = +1
Query: 79 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 258
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 259 RL-FEGNALLRRLVRIGVL------DEKQM--KLDYVLGLKIEDFLXRRLQTQVFKAGLA 411
+ G +LLRRL++ G+L D++++ L+ VL L I +L RRLQ +VF AGLA
Sbjct: 65 DIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLA 124
Query: 412 KSIHHARILIRQRHI 456
KS+HHAR+LI R I
Sbjct: 125 KSVHHARLLIGGRCI 139
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 103 bits (246), Expect = 3e-21
Identities = 60/131 (45%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 243
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 244 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIH 423
D + +++RL R +L +K LD VL L +E+ L RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 424 HARILIRQRHI 456
AR LI HI
Sbjct: 123 QARQLITHGHI 133
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 97.9 bits (233), Expect = 1e-19
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 247 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHH 426
+ R L+++L R+G++++ LD +LGL E++L RRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 427 ARILIRQRHI 456
AR LI HI
Sbjct: 122 ARQLIVHGHI 131
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 97.9 bits (233), Expect = 1e-19
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
+ E L L + G+L + LD VL L +ED L RRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 436 LIRQRHI 456
LI HI
Sbjct: 126 LIVHGHI 132
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 96.3 bits (229), Expect = 3e-19
Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Frame = +1
Query: 97 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 270
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 271 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQR 450
+L ++G +++ ++LD +L L + L RRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 451 HI 456
H+
Sbjct: 132 HV 133
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 95.5 bits (227), Expect = 6e-19
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 247 -----KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLA 411
+D + + ++++L +G+L E KL+ VL LK++D + RRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFA 122
Query: 412 KSIHHARILIRQRHI 456
SI AR I HI
Sbjct: 123 NSIKQARQFIVHGHI 137
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 94.3 bits (224), Expect = 1e-18
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 7/137 (5%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 240
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 241 -----EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAG 405
E + + +L +L+R G++ + +D +L LK E+ L RRLQTQV + G
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
Query: 406 LAKSIHHARILIRQRHI 456
LA+++ AR I HI
Sbjct: 123 LARTVIQARQFITHGHI 139
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 93.5 bits (222), Expect = 2e-18
Identities = 51/136 (37%), Positives = 76/136 (55%)
Frame = +1
Query: 64 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 243
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 244 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIH 423
G + RL RIG+L E++ +LD VL L++ D L RRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 424 HARILIRQRHIR*DNS 471
AR + H+ D S
Sbjct: 117 QARQFVSHGHVTVDGS 132
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 93.1 bits (221), Expect = 3e-18
Identities = 46/131 (35%), Positives = 79/131 (60%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
K + +L + ++ L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 436 LIRQRHIR*DN 468
LI +HI+ N
Sbjct: 130 LIMHKHIQVKN 140
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 89.4 bits (212), Expect = 4e-17
Identities = 54/102 (52%), Positives = 67/102 (65%), Gaps = 7/102 (6%)
Frame = +1
Query: 175 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 333
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 334 DYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+ GL+I F ++LQTQVF+ L KSI HA +L+ HIR
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIR 141
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 89.0 bits (211), Expect = 5e-17
Identities = 51/130 (39%), Positives = 73/130 (56%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 247 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHH 426
++ E L L R G+L ++ LD VL L +E L RRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 427 ARILIRQRHI 456
AR I HI
Sbjct: 122 ARQFIVHGHI 131
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 87.4 bits (207), Expect = 2e-16
Identities = 47/125 (37%), Positives = 73/125 (58%)
Frame = +1
Query: 82 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 261
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--R 66
Query: 262 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILI 441
+ LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 67 ADKEKELLDHLVRAGFI-SPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 442 RQRHI 456
HI
Sbjct: 126 VHGHI 130
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 82.6 bits (195), Expect = 4e-15
Identities = 50/130 (38%), Positives = 73/130 (56%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 247 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHH 426
+ +R + LLR L RIG++ K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 427 ARILIRQRHI 456
AR + HI
Sbjct: 121 ARQAVVHGHI 130
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 79.8 bits (188), Expect = 3e-14
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +1
Query: 97 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 276
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 277 A-LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRH 453
L +L ++GVL E +LD VL L ++D L RRLQT + + GLAK++ AR I H
Sbjct: 70 ERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGH 128
Query: 454 I 456
I
Sbjct: 129 I 129
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 72.9 bits (171), Expect = 3e-12
Identities = 44/120 (36%), Positives = 67/120 (55%)
Frame = +1
Query: 82 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 261
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHD-- 66
Query: 262 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILI 441
+ ++ R+V+ G+L E L+ VL + FL RRLQT VFK GLA++I AR LI
Sbjct: 67 --TSDKIIARMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 3e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 178 VWRVKYTLARIRKAARELLTLEEKDPKRLF 267
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 58.8 bits (136), Expect = 6e-08
Identities = 39/125 (31%), Positives = 64/125 (51%)
Frame = -2
Query: 456 NMPLPDQNSGMMDGLRQASFEHLRLQTTXQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KG 277
N+ L DQ+S +++ L Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ +
Sbjct: 58 NVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQS 117
Query: 276 ITFEQXXXXXXXXXXXXXXXXXXXXERVFDAPYFTLVAETVLSDDLQLLVKACLFKRTTR 97
ITFEQ + ++ F+LV +TV + LQ V+ F R+
Sbjct: 118 ITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSLVLQTVFTSQLQFGVQTSGFVRSLW 177
Query: 96 CHVRL 82
V L
Sbjct: 178 SRVSL 182
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 52.0 bits (119), Expect = 7e-06
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 313 DEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSI 420
D ++ KLDYVL L +E+FL RRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 50.8 bits (116), Expect = 2e-05
Identities = 31/105 (29%), Positives = 49/105 (46%)
Frame = +1
Query: 145 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 324
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 325 MKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
KL + + F RRL + + + S A + H+R
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVR 134
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 48.8 bits (111), Expect = 7e-05
Identities = 30/109 (27%), Positives = 53/109 (48%)
Frame = +1
Query: 133 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 312
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 313 DEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+ L+ + F RRL T + K +A+ + A + Q H+R
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVR 137
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 47.6 bits (108), Expect = 2e-04
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +1
Query: 145 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 324
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 325 MKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
LD + L L RRL + K + + I ++Q H+R
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVR 136
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 234
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 43.6 bits (98), Expect = 0.002
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 133 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 309
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R LL +L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 310 LDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+ K L+ + F RRL + + +++++ HA +I H+R
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVR 136
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 43.6 bits (98), Expect = 0.002
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +1
Query: 130 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 309
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 310 LDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
L K D + + RRL + + +A++I A I Q H+R
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVR 137
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 42.3 bits (95), Expect = 0.006
Identities = 27/110 (24%), Positives = 53/110 (48%)
Frame = +1
Query: 130 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 309
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 310 LDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+D KQ ++ + F RR + K A+ + A L+ H+R
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVR 136
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 38.7 bits (86), Expect = 0.070
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 187 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 360
+KY L+R +R A ++ L+ KDP R + +L++L +G++ KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 361 DFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
F RRL + K +A+++ A ++ HIR
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIR 92
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 37.1 bits (82), Expect = 0.21
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = -3
Query: 467 LSHRICLCRIKILA*WMDFARPALNTCVCRRRSKK 363
L RI RIK A D ARP+L T VC+RRSKK
Sbjct: 84 LPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 36.3 bits (80), Expect = 0.37
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 186 APYFTLVAETVLSDDLQLLVKACLFKRTTRCHVRL 82
AP +LVA+ L+DDLQL V+A L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 36.3 bits (80), Expect = 0.37
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 238 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKS 417
L+EK R F N ++ V K +G + L RRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 418 IHHARILIRQRHIR*DN 468
I+ AR+L+ +H+ +N
Sbjct: 148 IYQARLLVNHKHVLVNN 164
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 35.9 bits (79), Expect = 0.49
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = +1
Query: 202 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRL 381
AR +K + + L EK + G +L R+ EK V G + L RRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 382 QTQVFKAGLAKSIHHARILIRQRHI 456
VF+AG A S AR ++R +HI
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHI 126
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 34.7 bits (76), Expect = 1.1
Identities = 25/106 (23%), Positives = 46/106 (43%)
Frame = +1
Query: 142 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK 321
I+ + + ++ E + + +RK + L L + D R+ + RL +GV+
Sbjct: 32 IMARFHIHDESEFEAYEKAVLNLRKLSFLLQKLPKDDAFRMVLTKRICDRLYDLGVIILP 91
Query: 322 QMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+ L + + DF RRL V + + A LI+Q HI+
Sbjct: 92 EKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIK 137
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 1.5
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 112 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 291
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 34.3 bits (75), Expect = 1.5
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +1
Query: 232 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLA 411
+ L+EK R G L R +R +L+ + K G + L RRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 412 KSIHHARILIRQRHIR 459
++ AR L+ RH+R
Sbjct: 107 PTVIAARQLVSHRHVR 122
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 33.9 bits (74), Expect = 2.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 436 KFWHDGWTSPGQL*TPASAD 377
+FWH GW+SP Q TPA+A+
Sbjct: 103 QFWHVGWSSPSQSSTPAAAE 122
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 33.5 bits (73), Expect = 2.6
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Frame = +1
Query: 130 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 309
+E KI+ Y +++ E + + RI K EL L E D R+ + L+ +L +
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 310 ----LDEKQMKLDYVLG-------LKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHI 456
L QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 457 R 459
R
Sbjct: 147 R 147
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 33.5 bits (73), Expect = 2.6
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 169 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 345
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 346 GLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
+ F RRL + G+ +S+ A L+ Q H+R
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVR 136
>UniRef50_Q39G63 Cluster: Putative monooxygenase, FAD-binding; n=1;
Burkholderia sp. 383|Rep: Putative monooxygenase,
FAD-binding - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 374
Score = 33.1 bits (72), Expect = 3.5
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 LSASSACELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKII--GEYGLRNKREVWRV 189
LS S L ++ + R+P+VFS+ + R PF +A D G L
Sbjct: 252 LSNDSVASLRQLASERLPAVFSQLVLATRAPFVQAIFDALSPHFAHGRVALVGDAACTVR 311
Query: 190 KYTLARIRKAARELLTLEEKDP 255
+T + KAAR+ ++L E P
Sbjct: 312 PHTASGTSKAARDAVSLAESLP 333
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 32.7 bits (71), Expect = 4.6
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +1
Query: 211 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQ 390
RK ++ + LEEK R G + L + + + + VL L++ L RL
Sbjct: 35 RKISQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVL-LQL---LEMRLDNT 90
Query: 391 VFKAGLAKSIHHARILIRQRHIR*DN 468
+F+ G+A +I AR L+ RHI +N
Sbjct: 91 IFRLGMASTIPGARQLVSHRHILINN 116
>UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A member 12;
n=29; Fungi/Metazoa group|Rep: ATP-binding cassette
sub-family A member 12 - Homo sapiens (Human)
Length = 2595
Score = 32.7 bits (71), Expect = 4.6
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 271 LRTISWGPSPRG*GAHEQPYG----YERACI*RAILHACCGDRTLR*SSTLGQGVP---F 113
LRT W P P +H Q YG Y + I RAI+ G R + + Q +P F
Sbjct: 998 LRTKIWAPGPHNSPSHNQIYGRAFIYLQDSIERAIIELQTG-RNSQEIAVQVQAIPYPCF 1056
Query: 112 QKDDEVSRTSLKIPTVL 62
KD+ ++ S +P VL
Sbjct: 1057 MKDNFLTSVSYSLPIVL 1073
>UniRef50_UPI0000DBF3A8 Cluster: UPI0000DBF3A8 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DBF3A8 UniRef100 entry -
Rattus norvegicus
Length = 1725
Score = 32.3 bits (70), Expect = 6.0
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 271 LRTISWGPSPRG*GAHEQPYG----YERACI*RAILHACCGDRTLR*SSTLGQGVP---F 113
+RT W P P +H Q YG Y + I RAI+ G R + + Q VP F
Sbjct: 23 IRTKIWAPGPHNSPSHNQIYGRAFIYLQDSIERAIIELQTG-RNSQEVAVQVQAVPYPCF 81
Query: 112 QKDDEVSRTSLKIPTVL 62
KD+ ++ S +P VL
Sbjct: 82 MKDNFLTSVSYSLPIVL 98
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 6.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 37 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 213
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 214 K 216
+
Sbjct: 335 R 335
>UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 382
Score = 31.9 bits (69), Expect = 8.0
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 169 KREVWRVKYT---LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDY 339
+R W+V A + R T+E KD + A + RLVRI D+K+ +
Sbjct: 162 QRRGWKVTINDCPAAEVIGIDRATFTVEGKDAFGMLRAEAGVHRLVRISPTDDKRRRQTT 221
Query: 340 VLGLKIEDFLXRRLQTQVFKAGLAKSIHHA 429
G+++ L + ++ + ++HA
Sbjct: 222 FAGVEVIPVLPDDIDIEISPDDIRVDVYHA 251
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 8.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 118 ARLDQELKIIGEYGLRNKREVWRVKYTLA 204
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,931,664
Number of Sequences: 1657284
Number of extensions: 9344191
Number of successful extensions: 25333
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 24721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25313
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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