Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6c20
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 217 6e-58
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 217 7e-58
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 48 8e-07
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 25 4.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 6.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.2
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 8.2
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 8.2
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 217 bits (531), Expect = 6e-58
Identities = 102/131 (77%), Positives = 115/131 (87%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 247 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHH 426
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFL RRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 427 ARILIRQRHIR 459
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 217 bits (530), Expect = 7e-58
Identities = 102/131 (77%), Positives = 115/131 (87%)
Frame = +1
Query: 67 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 246
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 247 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHH 426
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFL RRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 427 ARILIRQRHIR 459
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 48.0 bits (109), Expect = 8e-07
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = +1
Query: 130 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 309
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 310 LDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
L K D + RRL + K +++ + A LI Q H+R
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVR 137
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 325 MKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHI 456
+++D L + +E FL + TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 6.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 184 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 351
R++YT R+R AR+ LT LF + L+ + +L++KQ + +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 40 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 198
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 8.2
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 19 SASSACELAKMV--NNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRN 168
+A + LAKM+ ++++P+ T +KA +D+ L+ EYG+RN
Sbjct: 59 TAEVSIYLAKMLEQHHKIPACLHLTCTN----VDKAIIDKALETAKEYGIRN 106
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 191 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 84
LT H+ + + + +WS + F R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,742
Number of Sequences: 5004
Number of extensions: 37499
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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