Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6c20
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 192 2e-49
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 192 2e-49
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 190 4e-49
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 144 3e-35
07_03_1358 - 25984897-25984997,25985623-25985650 47 9e-06
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 29 2.0
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 3.5
04_04_0667 + 27097741-27098085,27098203-27098547 28 4.7
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 6.2
07_03_0720 - 20926363-20926794 27 6.2
03_06_0069 - 31449319-31450368 27 6.2
10_01_0205 + 2202034-2202150,2202163-2202261,2202349-2202546,220... 27 8.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 192 bits (467), Expect = 2e-49
Identities = 89/128 (69%), Positives = 108/128 (84%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 436 LIRQRHIR 459
LIRQRHIR
Sbjct: 130 LIRQRHIR 137
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 192 bits (467), Expect = 2e-49
Identities = 89/128 (69%), Positives = 108/128 (84%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 436 LIRQRHIR 459
LIRQRHIR
Sbjct: 346 LIRQRHIR 353
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 190 bits (464), Expect = 4e-49
Identities = 89/126 (70%), Positives = 107/126 (84%)
Frame = +1
Query: 82 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 261
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 262 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARILI 441
+FEG ALLRR+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 442 RQRHIR 459
RQRHIR
Sbjct: 155 RQRHIR 160
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 144 bits (349), Expect = 3e-35
Identities = 74/127 (58%), Positives = 90/127 (70%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 255
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 256 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSIHHARI 435
+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 436 LIRQRHI 456
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 9e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 76 FSKTYVTPRRPFEKARLDQELKIIGEYG 159
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 492 GSSN*SATVISPNMPLPDQNSGMMDGLRQASF 397
GS S + + P M LP QN+G+M+ ASF
Sbjct: 37 GSWRKSGSRVDPPMVLPQQNAGLMEADGSASF 68
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 130 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 252
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 319 KQMKLDYVLGLKIEDFLXRRLQT-QVFKAGLAKSIHHARILIRQRHIR*DNSGALIAAA 492
KQ++ DY D L R+++ + K L +H R +R+R R N GA AA
Sbjct: 82 KQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAA 140
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 109 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 243
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>07_03_0720 - 20926363-20926794
Length = 143
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +3
Query: 366 LGXSSADAGVQSWPGEVHPSCQNFDPAKA-YSVR*Q----WRSNCCC 491
+G DAG +WPG V S D A A + R + WR + CC
Sbjct: 95 IGGRGEDAGATAWPGLVQISGNGDDVAAAVHRARSRATMTWRRSRCC 141
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 427 HDGWTSPGQL*TPASADDXPRSPQSSDQAHNRVSSVFHPVLQYE 296
HD +S G L P+SA P + SDQ H VS+ P Y+
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYD 279
>10_01_0205 +
2202034-2202150,2202163-2202261,2202349-2202546,
2203667-2203876
Length = 207
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 335 IMCLV*RLRTSWXVVCRRRCSKLAWRSPSIMPEF*SGKGIFGEITV 472
IM LV + T+W V CRR + R +P+ G FG + V
Sbjct: 113 IMALV--VPTAWLVPCRRLVHAMPKRKKIAIPKLEGVTGCFGAVMV 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,665
Number of Sequences: 37544
Number of extensions: 267067
Number of successful extensions: 651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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