Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c20
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   229   1e-60
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    33   0.085
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  229 bits (559), Expect = 1e-60
 Identities = 109/133 (81%), Positives = 122/133 (91%)
 Frame = +1

Query: 61  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 240
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 241 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLXRRLQTQVFKAGLAKSI 420
           E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFL RRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 421 HHARILIRQRHIR 459
           HHARILI+Q HIR
Sbjct: 123 HHARILIKQHHIR 135


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 169 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 345
           KRE + +  TLA + R+ A  +  L E DP R      +L +    G++      L+ + 
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98

Query: 346 GLKIEDFLXRRLQTQVFKAGLAKSIHHARILIRQRHIR 459
            +    F  RRL   +   G+ +S+  A  L+ Q H+R
Sbjct: 99  KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVR 136


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +1

Query: 151 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 318
           E G       +R  + LAR +   R   TL EKD +++F+   G   ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165

Query: 319 KQMKLDYVLGLKIEDFLXRRLQTQV-FKAGLAKSIHHARIL 438
              K  +   +  E+   R L T V    G    + H R+L
Sbjct: 166 LFAKCSFEELMPAEN--VRSLGTPVELSGGSVTVLPHRRVL 204


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 95  VTYVFENTDGTLLFTILASSH 33
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical
           protein C18H2.3 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +1

Query: 52  VNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKRE-VWRVKYTLARIRKAARE 228
           +N+    + +K  +T R+ FEK+     ++   E  LRN  E VW     L  ++K  +E
Sbjct: 119 LNHFANEILNKDLMTQRQIFEKSATINGIRDAAEI-LRNVFEKVWNQLMKLNSVKKDFKE 177

Query: 229 LLTLEEKDPKRLFEGNALLRR---LVRIGVLDEKQMKLDYVLGL 351
            +   +    R+++ N +  +       GV+ E +   D + GL
Sbjct: 178 AVENSKHLTDRIYDLNFVRYQGELHAASGVIQEVKAYFDEIFGL 221


>U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical
           protein F08F3.1 protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 64  VPSVFSKTYVTPRRPFEKARLDQELKI 144
           VP   ++T VTP RP EK +  ++++I
Sbjct: 74  VPVFHNETTVTPERPIEKKKRVRQIQI 100


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 394 TPASADDXPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEG 278
           T A     PR P+SS   H+RV + +    + + DD EG
Sbjct: 89  TEAHRYHPPRQPRSSAPTHHRVPADYPSDEEDDYDDTEG 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,975
Number of Sequences: 27780
Number of extensions: 216196
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)