Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c20
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 134 SWSRRAFSKGRRGVTYVFENTDGTL 60
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 134 SWSRRAFSKGRRGVTYVFENTDGTL 60
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 134 SWSRRAFSKGRRGVTYVFENTDGTL 60
           S++  + S  +  +TYV++N +GTL
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 134 SWSRRAFSKGRRGVTYVFENTDGTL 60
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 298 EPDDVEGHYLRTISWG 251
           +PD  E  Y+RT+S G
Sbjct: 271 QPDTPEEKYIRTLSKG 286


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 235 TLEEKDPKRLFEGNALLR 288
           T EEK P+  F G  L R
Sbjct: 17  TPEEKRPRTAFSGEQLAR 34


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 363 VLNLQTKHIIEFHLFFIQYSNTNQ 292
           V N+  K  + F L F+Q  N N+
Sbjct: 45  VQNMTEKVHVNFGLAFVQLINVNE 68


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 272 VMPFYVVWFVLEYWM 316
           V+PF   W V + W+
Sbjct: 118 VLPFSATWEVFKVWI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,784
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)