Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c19
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.59 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.5  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   9.5  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 488 PGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPPDIP 315
           P DTI  G+S++++      +  PE    NP+    +   A   A   T G NPP++P
Sbjct: 246 PSDTIPPGASMARSD----PSQVPE---SNPSAAAAVAAAAVAAAANLTNGVNPPEVP 296


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = -3

Query: 503 SNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPP 324
           S P PP    +L    S      I  P P      P+  P IP      A    P ++PP
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185

Query: 323 DIP 315
             P
Sbjct: 186 SAP 188


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 497  PTPPGDT--IDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPP 324
            P P  D   I + S+     I     P P+ +SG P+  P +P  ++ +     P   PP
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 35  SIFN*VFNCHLPTFFKPIQLGLNSINTP 118
           SIF  VF  +LPTFF  ++  L   + P
Sbjct: 605 SIFLKVFETNLPTFFDQLKKNLTLFHIP 632


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 470 LGSSISKAAIFPIANPYPE*TSGNP-TDRPTIPGKAATL 357
           LGS    +  F +A PYPE    +P T+RP     +A L
Sbjct: 506 LGSPTILSTSFSLARPYPEPALVSPSTERPPRSSFSAAL 544


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 248 PSTFIFGWKP 219
           P TF+FGW+P
Sbjct: 268 PKTFVFGWQP 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,989
Number of Sequences: 5004
Number of extensions: 64281
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)