Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6c19
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0202 + 5735613-5736170 31 0.80
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 31 1.1
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834... 30 1.9
02_05_1214 + 34976814-34979813 30 1.9
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890... 28 5.6
05_01_0132 + 890800-890883,891410-891484,891570-891626,892169-89... 28 7.5
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 28 7.5
02_05_1252 + 35261135-35261935 28 7.5
10_05_0118 - 9338094-9338294,9338478-9338730,9339015-9339176,934... 27 9.9
03_06_0679 + 35492372-35492398,35492942-35493193 27 9.9
>09_02_0202 + 5735613-5736170
Length = 185
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 355 ANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGG 492
A+ AA G+V V P +G G A+G AA D ++ +PGG
Sbjct: 113 AHTAAGAGVVNSGVAPPGAIAGAGGALGRPAAAAGGDGSAVDAPGG 158
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = -3
Query: 599 IWSNKL*ANCSLIGRTSFSCKFVLNKRTPQFISNPTPPGDTIDLGSSISKAAIFPIANPY 420
+W + S+ +T L RTP+F++NPT G++ + G +++ A A
Sbjct: 512 VWDQEAGRYVSVPAQTRAVPGLDLPARTPRFLANPT--GESSNHGKNLAPANASSSAI-- 567
Query: 419 PE*TSGNPTDRPTIPGKAATLA--ICFTPGRN 330
+SG P++R T G++ I T GRN
Sbjct: 568 ---SSGQPSERLTYTGQSIFFGGPILSTSGRN 596
>04_04_0204 +
23582239-23582338,23582866-23583213,23583357-23583472,
23583565-23584003,23584165-23584203,23584282-23584569,
23584667-23584806,23585080-23585563,23585828-23586090
Length = 738
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 530 LNKRTPQFISNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAA 363
+ TP F++ P PGD + + ISK A P +P P T + + P P + A
Sbjct: 658 MGNNTPSFMA-PARPGDLLQI---ISKPAQPPAMSPMPLLTGSDVAEPPLPPARTA 709
>02_05_1214 + 34976814-34979813
Length = 999
Score = 29.9 bits (64), Expect = 1.9
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 4/144 (2%)
Frame = +1
Query: 229 PNMNVEGVFYVNSTLEKLMLEELRNCCRPGMS---GGFLPGVKQIANVAALPGIVGRSVG 399
P N + +F V E+ ++ L + PG G + V I +V R G
Sbjct: 468 PFWNEDLMFVVAEPFEEFLVLSLEDHVSPGRDDVLGRLVVPVSSIERRWDEKLVVSRWFG 527
Query: 400 LPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFDINCGVRLLRTNLHEKDVLPIKEQLA 579
L G A GN F + GG L + D+ P +QL
Sbjct: 528 LDRGTGGGNVASGNTNRFGSRVHLRLSLDGGYHV-------LDEATAYSSDLRPTGKQLW 580
Query: 580 QSLFDHIPVGV-GSKGIIPMNARD 648
Q + +GV G+ G+IPM ARD
Sbjct: 581 QPHVGVLELGVLGATGLIPMKARD 604
>01_06_1665 -
38988014-38988078,38988459-38988546,38988921-38989082,
38989268-38989359,38989896-38990007,38990040-38990181,
38990448-38990668
Length = 293
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 321 VRWIPSWCKTDS*CCSFTGNCRPVS 395
++W + C+ S CCS G CRP +
Sbjct: 53 LQWPGTVCRQTSHCCSSNGCCRPTT 77
>05_01_0132 +
890800-890883,891410-891484,891570-891626,892169-892251,
892424-892482,892844-892992,893249-893386,893862-894020,
894151-894246
Length = 299
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 466 PKSIVSPGGVGFDINCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNA 642
P V PGG G+ +T+ EKD+ + E+++Q +FD I V + +P N+
Sbjct: 158 PGYFVFPGGHSEPQEIGILAHQTD--EKDLAVLNERVSQEMFDGIIREVVEETGVPSNS 214
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 163 NEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNST--LEK---LMLEELRNCCRPG 318
NE+ E +C +K+G P ++ +F+VN LEK + ++ + CRPG
Sbjct: 506 NEQYLLTEYKGKFCVILKEGSSPEDMLKSLFHVNYLYWLEKYLGIKPSDVASACRPG 562
>02_05_1252 + 35261135-35261935
Length = 266
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 256 YVNSTLEKLMLEELRNCCRPGMSGGFLP---GVKQIANVAALP 375
+ N+T E+L LEE P M GG P G IA+ +ALP
Sbjct: 197 FANATYERLPLEEEEEGSGPPMPGGAEPLMAGGHGIADPSALP 239
>10_05_0118 -
9338094-9338294,9338478-9338730,9339015-9339176,
9340166-9340296
Length = 248
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 395 TDRPTIPGKAATLAICFTPGR 333
T R T G+A TLA+ +TPGR
Sbjct: 95 TPRRTPYGRAGTLALLYTPGR 115
>03_06_0679 + 35492372-35492398,35492942-35493193
Length = 92
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 274 EKLMLEELRNCCRPGMSG-GFLPGVKQIANVAALPGIVGRSVGLPDV 411
E L+ELR C P G PGV + +PG++G G P +
Sbjct: 18 EPTTLQELR-CAPPVFCGHNGAPGVVVSGDDGGIPGVIGSDGGAPGI 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,013,838
Number of Sequences: 37544
Number of extensions: 388620
Number of successful extensions: 876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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