Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c19
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   3e-17
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)                      28   7.6  

>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 45/71 (63%), Positives = 52/71 (73%)
 Frame = +1

Query: 442 MAAFDMDDPKSIVSPGGVGFDINCGVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSK 621
           MAAFDM  P+++VSPG              TNL EKDV P+KE+LAQSLFDHIPVGVGSK
Sbjct: 1   MAAFDMSLPEAVVSPG--------------TNLEEKDVQPVKERLAQSLFDHIPVGVGSK 46

Query: 622 GIIPMNARDLE 654
           G+IPM A+DLE
Sbjct: 47  GVIPMGAKDLE 57


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = -3

Query: 515 PQFISNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPG 336
           P+   N TPP     L  +  +    P   PYP  TS   T +P IP           P 
Sbjct: 627 PKPFPNITPPEVRPSLPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPP---------APS 677

Query: 335 RNPPDIP 315
           R PP +P
Sbjct: 678 RPPPQLP 684


>SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)
          Length = 557

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 394 LTGLQFPVKLQH*LSVLHQEGIHLTYQVYNNS*APPTLVSQ 272
           +TG++FPV ++H   V  Q  I++    Y+N+   P  +S+
Sbjct: 201 ITGVEFPVTVKHFNKVEKQNRININVFSYDNAQPYPMYISK 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,048,699
Number of Sequences: 59808
Number of extensions: 459266
Number of successful extensions: 1099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)