Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c19
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical pr...   246   1e-65
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    29   2.9  
Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81475-2|CAB03908.1|  384|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81475-1|CAB03912.1|  384|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical
           protein F16A11.2 protein.
          Length = 505

 Score =  246 bits (602), Expect = 1e-65
 Identities = 112/166 (67%), Positives = 139/166 (83%)
 Frame = +1

Query: 154 RQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLEELRNCCRPGMSGGF 333
           R + EE  +++++    +RIKKGF PNMNVEG FYVN++LE+LM +EL+  C     GGF
Sbjct: 3   RTFEEECDFIDRLTDTKFRIKKGFVPNMNVEGRFYVNNSLEQLMFDELKFSCDGQGIGGF 62

Query: 334 LPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFDINC 513
           LP V+QIANVA+LPGIVG S+GLPD+HSGYGF+IGN+AAFD+ +P+S++SPGGVGFDINC
Sbjct: 63  LPAVRQIANVASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPESVISPGGVGFDINC 122

Query: 514 GVRLLRTNLHEKDVLPIKEQLAQSLFDHIPVGVGSKGIIPMNARDL 651
           GVRLLRTNL E++V P+KEQL QSLFDHIPVGVGS+G IPM A DL
Sbjct: 123 GVRLLRTNLFEENVKPLKEQLTQSLFDHIPVGVGSRGAIPMLASDL 168


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +3

Query: 6   SSLHFSERFFQFSTKFSIAIYLRFSNLSS*V*IALT 113
           S L FS+RFF F  K+S+ +++  S++++   +ALT
Sbjct: 3   SGLEFSKRFFDF--KYSLLLFITISSMTTPSSLALT 36


>Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical
           protein C44B9.3 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 569 SLIGRTSFSCKFVLNKRTPQFISNPTPPGDTIDLGSSISKAAIF 438
           +L   T   C ++ +++ P+F   P P  ++  LG   S   +F
Sbjct: 187 ALTSTTVLLCVYISDRKKPEFFDMPLPQANSTVLGGRSSDTGLF 230


>Z81475-2|CAB03908.1|  384|Caenorhabditis elegans Hypothetical
           protein C24H11.2 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 163 NEELKYLEKINPYCWRIKKGFQPNMNVEGVF-YVNSTLEKLMLEELRNCCRPGMSGGFLP 339
           N ELK + K   +   +KK FQ     E V+ + N     + L  + +     M GG  P
Sbjct: 179 NHELKAINKNYGFHAELKKRFQREEVYESVYNHFNQVFSYMPLCAIVSKRILCMHGGISP 238

Query: 340 GVKQIANVAALP 375
            +K + ++ A+P
Sbjct: 239 HLKSLDDIRAIP 250


>Z81475-1|CAB03912.1|  384|Caenorhabditis elegans Hypothetical
           protein C24H11.1 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 163 NEELKYLEKINPYCWRIKKGFQPNMNVEGVF-YVNSTLEKLMLEELRNCCRPGMSGGFLP 339
           N ELK + K   +   +KK FQ     E V+ + N     + L  + +     M GG  P
Sbjct: 179 NHELKAINKNYGFHAELKKRFQREEVYESVYNHFNQVFSYMPLCAIVSKRILCMHGGISP 238

Query: 340 GVKQIANVAALP 375
            +K + ++ A+P
Sbjct: 239 HLKSLDDIRAIP 250


>Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical
           protein F28H7.8 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +1

Query: 205 WRIKKGFQPNMNVEGVFYVNSTLEKLMLEELRNCCRPGMSGGFLPGVKQIANVAALP 375
           W     F P  + + + +  S  ++ +L+ +   C P   GG +P ++ +  V  +P
Sbjct: 210 WSALSPFIPEQSKQRIVFAGSNWKEELLDIVDKECLPERYGGMIPDIQCLKPVDPIP 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,740
Number of Sequences: 27780
Number of extensions: 361019
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)