Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c17
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.91 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 552 SAI*YSSVYLANNYIVQYSVNVSHNNVSYAILLCYELYAI 671
           S++   +++  NNY   Y+   ++NN +Y   L Y+ Y I
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 38  VSILRMNLVIFLWLSIFNLYTGHVKL*NTNMIFRMN 145
           +S +R+ LVI L      ++ G V + N N+I   N
Sbjct: 52  LSFIRIVLVILLRAGYVLIHIGSVPVNNINLILLQN 87


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 500 FERYITEPLDIISHNFQKQQNNDM 429
           +ER   E + I+S+ +QK  N D+
Sbjct: 365 YERQNNEYIWIVSNKYQKIANGDL 388


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 504 LAETCSCNCFQTTLYYSAI*YSSVYLANNYIVQYSVNV 617
           +  + S +C  +  YY+   Y  +Y   NYI Q  + V
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPV 340


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 625 TMYRTQYCCAMSYMLLYYSVV 687
           T++   YC  M  ++ YYS +
Sbjct: 214 TIFTFSYCIPMILIIYYYSQI 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,899
Number of Sequences: 438
Number of extensions: 3780
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)