Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c16
         (680 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    27   0.55 
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    25   2.9  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    24   3.9  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    24   5.1  

>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.55
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 656 PRVTQMVNLELTVSEMPDLDSSVPTTGYNNGVGM 555
           P++  M   + T   +PD D S P+ GY N + M
Sbjct: 355 PKILMMRRAKYT---LPDYDDSTPSNGYTNEIEM 385


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 69  FSKMSETLKLRGTLRGHNGWVTQ 137
           F K+ E  ++   LRG+  W+TQ
Sbjct: 396 FQKLREKQQIEEDLRGYLDWITQ 418


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 VYLKSVYTVIRTSFLMLCCLVTVITHFPVLGTRLCVCG 348
           +YL++ +T +    +  CC +  +T+F +     CV G
Sbjct: 396 IYLETEHTNMNIYLVQNCCQLFFMTNFGINFILYCVSG 433


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 294 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL 404
           SDG    +   +KT RLW        RR+  +  D++
Sbjct: 404 SDGKKPPNNPLEKTNRLWGGVINDIKRRYPMYKSDIM 440


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 771,435
Number of Sequences: 2352
Number of extensions: 15650
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)