Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c14
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.13 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.8  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.8  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.9  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 545 YSNINKAGLFQQPKLCNLYKASRESLRHHV 634
           Y      G+F  PK C  Y   R  L +H+
Sbjct: 557 YGTCRSEGIFSDPKNCAAYYVCRSGLSYHL 586


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 134 ALTNYSLGTHTHN 96
           ++ NY+LG H HN
Sbjct: 66  SMVNYTLGQHHHN 78


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 134 ALTNYSLGTHTHN 96
           ++ NY+LG H HN
Sbjct: 125 SMVNYTLGQHHHN 137


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 134 ALTNYSLGTHTHN 96
           ++ NY+LG H HN
Sbjct: 66  SMVNYTLGQHHHN 78


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 134 ALTNYSLGTHTHN 96
           ++ NY+LG H HN
Sbjct: 125 SMVNYTLGQHHHN 137


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 330 SNSKLWKSRRICLISSEN 277
           S SK+W+  R C+   E+
Sbjct: 76  SGSKIWQMERSCMCCQES 93


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 502 RKVHLNHSTIKINPI*QYQQGRAI 573
           ++VHL  ST+  N   + Q+ RAI
Sbjct: 205 KRVHLGQSTVNANGETKRQRTRAI 228


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 546 IAISTRPGYFNNLNYAICIKRAAKACG 626
           +A+S    Y   +    CI   A+ACG
Sbjct: 489 LAMSRDQNYLYRMTCLFCINVLAEACG 515


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 41  CQTIGGTALGTCADGY-GICCVCE 109
           C+ IG +    C+DGY G  C  E
Sbjct: 161 CEDIGNSHRCHCSDGYSGSYCQTE 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,095
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)