Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c14
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    30   0.32 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    30   0.32 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.74 
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   2.3  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   3.0  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    27   3.0  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    27   3.0  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   4.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.9  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 230 PSPSYERLSCTFTLH--KFSEDIKQIRLDFHSFELLPPSGG--VCLEDQFVVSGQNANDF 397
           P PSYER   +FT+   K S+ I  + LD  +F   PPS      L +QF V      D+
Sbjct: 414 PDPSYERTEASFTIFKAKLSKVIASV-LD-RAFRFTPPSYSEVEALTEQFKVLENELPDY 471

Query: 398 IPI 406
           + I
Sbjct: 472 MRI 474


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 311 FHSFELLPPSGGVCLEDQFVVSGQNANDFIPIICGINTGKHGDTAE 448
           F+SFE  PP   V LE+      + + + +P+   +  G  G TAE
Sbjct: 16  FYSFEYFPPKTTVGLENLSSRITRMSRNMMPLFSSVTWGTAGSTAE 61


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +3

Query: 396 LYRSFAVSTRASMVTQLRAGDDLAAPTGCLQYFEEAEGSFESF-------NYQDKSDIAI 554
           LYR F +  R SM+    +G   +  +G  + F +   ++ S        +Y D  DI  
Sbjct: 269 LYRLFCIYLRFSMIDPT-SGFPSSTASGNWEVFHDFMSTYASTTTSQTDSSYNDVHDIVG 327

Query: 555 STRPGYFNNLNYA 593
           S++P Y  +L+Y+
Sbjct: 328 SSQPDYLESLDYS 340


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164 ITQFLCDENSAAVTGWFINSEFPSPSYERLSCTFTLHKF-SEDIKQIRLDFHSFELLP 334
           + +   D+   A++GWF   +   P Y+   C  T+    S  +KQ+ L+   F   P
Sbjct: 212 VEEVYVDKPRMAISGWFHYPQPGEPGYDANYCDNTVSTLQSLTMKQMDLELPRFSYYP 269


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 395 NHLHSDQKLQTDLQDILLLKEVAIQNYGNLDE 300
           N+L++  +LQ  + D++ + ++ IQ YG   E
Sbjct: 138 NYLNTQNELQGCINDVMSMSQLLIQRYGYKQE 169


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 514 NEPSASSKYCRQPVGAARSSPALSCVTMLARVDTAND 404
           + P+ +    R PVGAA  SP+ S + +  R+ + +D
Sbjct: 346 SSPNFNPAMRRSPVGAASRSPSRSTIGISNRIGSVDD 382


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 477 GCLQYFEEA---EGSFESFNYQDKSDIAISTRPGYFNNLNYAICIKRAA 614
           GC  + +E     G  +  N  D   + ++ +PG FNNL++   I +A+
Sbjct: 47  GCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFNNLSHLSQIHKAS 95


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 314 HSFELLPPSGGVCLEDQFVVSGQNANDFIPIICG 415
           H   +   + GVC  D + +SG++     P+I G
Sbjct: 38  HEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILG 71


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 INSEFPSPSYERLSCTFTLHKFSEDIKQIRLDFHSFE 325
           ++ E+P+ S  + SC + L +  E+  +I  D  SFE
Sbjct: 49  VHPEYPTSSNIQESCNWILQQVVENRSKINFDAWSFE 85


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 205  CHGSRILIAQELSYLLLTEKMRPKHLQIIV*ALTHTTDSVSVCTS 71
            C GS+ILIA++   + +T K + +HL + V A     +++ +  S
Sbjct: 2207 CVGSKILIAEDNPIVRMTLKKQLEHLGMDVDAAEDGKETLQIFES 2251


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 128 TNYSLGTHTHNRFRI 84
           T Y LG HTHN F +
Sbjct: 103 TAYGLGVHTHNLFML 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,260
Number of Sequences: 5004
Number of extensions: 56057
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)