Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c14
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    33   0.19 
01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505...    30   1.3  
12_01_0197 + 1456296-1456668,1456930-1458746                           29   3.1  
07_03_0632 - 20112297-20116562                                         27   9.4  

>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 338 SGGVCLEDQFVVSGQNANDFIPIICGINTGKHG 436
           +GG+CL+D+ VV G      I I+C  NT  HG
Sbjct: 303 NGGLCLKDRSVVEGLFLKGDIQILCTTNTLAHG 335


>01_01_0662 -
           5052390-5053022,5053182-5053319,5053429-5053656,
           5053736-5054035,5054568-5054636
          Length = 455

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 426 ASMVTQLRAGDDLAAPTGCLQYFEEAEGSFESFNYQDKSDIAISTRPGYFNNLNYAICIK 605
           +S+ T+L   +  A+ + C   F     SF +F   +K++ +I  RP Y   +N    IK
Sbjct: 370 SSLSTELHNDESSASSSSC---FASTPISFSTFVTTEKTEDSIRARPNY---MNMTESIK 423

Query: 606 RAAKAC 623
              KAC
Sbjct: 424 AKRKAC 429


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 554 YCYIGFILIVE*FK*TFRFFEVLQATCWSGEI 459
           Y +IG   IVE F   F +F VL+   WS E+
Sbjct: 385 YGFIGVFFIVEVFFFAFAWFLVLRKEMWSSEV 416


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +3

Query: 39   NVKLLEVLLWGLVQTDTESVVCVSA*TIICKCLGLIFSVRSK*LNSCAMRILLP*QDGLL 218
            N++ L ++  GL         C S    + + L  + S+    +N C+ +++LP Q+ + 
Sbjct: 1043 NLRELPLMSLGLAIRKLSLTGCGSYAETVFRYLQKLTSLTHLSINDCSQKLILPCQNLIS 1102

Query: 219  TQSFHLQVMKDYH 257
             ++ HL   K+ +
Sbjct: 1103 LENLHLSNCKELY 1115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,599
Number of Sequences: 37544
Number of extensions: 354155
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)