Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c14
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical p...    30   1.2  
U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical p...    30   1.2  
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    29   2.8  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    29   2.8  

>U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical
           protein C46H11.10b protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 184 IAQELSYLLLTEKMRPKHLQI 122
           I+ E+ YL L EK RPKHL +
Sbjct: 84  ISDEIEYLKLAEKFRPKHLTL 104


>U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical
           protein C46H11.10a protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 184 IAQELSYLLLTEKMRPKHLQI 122
           I+ E+ YL L EK RPKHL +
Sbjct: 187 ISDEIEYLKLAEKFRPKHLTL 207


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 245 ERLSCTFTLHKFSEDIKQIRLDFHSFELLPPSGGVCLEDQFVVSGQNA 388
           E LSC  T+H+    + Q +L+    E L     +C    F  +  NA
Sbjct: 204 EGLSCCTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNA 251


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 245 ERLSCTFTLHKFSEDIKQIRLDFHSFELLPPSGGVCLEDQFVVSGQNA 388
           E LSC  T+H+    + Q +L+    E L     +C    F  +  NA
Sbjct: 232 EGLSCCTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNA 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,414
Number of Sequences: 27780
Number of extensions: 323820
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)