Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c11
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.17 
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    31   0.23 
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    29   0.53 
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   2.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   4.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   4.9  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    26   6.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.6  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/90 (20%), Positives = 40/90 (44%)
 Frame = +1

Query: 439 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNN 618
           RV   HF   ++ R+V  ++K S     +W ++    +   L     ++  LD+  + +N
Sbjct: 282 RVHGFHFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHN 341

Query: 619 AANSDDTMLSESQAILKKAADRHCRTKRSS 708
                  ++   Q +  K+++    +K+SS
Sbjct: 342 -----QVVVPSQQPVADKSSNLFVTSKQSS 366


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 445 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLL 594
           + +H N YS+ R +V+      TSV  W+K     D+  + + ++ K LL
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLL 668


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 445 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 540
           + LH N+YS+ R ++ V+  SV     W  +N
Sbjct: 78  KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -2

Query: 572 TLAKEAASKLSFILF--HCATLVTL-HLITSTTFRFML*TLKC-KLSTLHRGHGIFFRFL 405
           +++++ AS+L + LF  H A L++L +L    T   ML   +  +   LHRGH   + F 
Sbjct: 281 SISQQKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFA 340

Query: 404 ILRMHIE 384
           +L   +E
Sbjct: 341 MLEQLLE 347


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 256 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 390
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 526 WNKINDNFDAASLASVLFE-KSLLD-DAEDSNNAANSDDTMLSESQAILKKAAD 681
           WN   ++FDA S A V+ E KSLL     D+     S   +L E+  ILK+ A+
Sbjct: 139 WNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKEN--ILKEDAE 190


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +1

Query: 541  DNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSE---SQAILKKAADRHCRTKRSST 711
            D+ D     S+L       + +D N + + +DT  SE   S  +   A + +    +S  
Sbjct: 957  DSADPIRKPSLLHTSKSYSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLP 1016

Query: 712  LKRQLDLNKF 741
             +RQ+    F
Sbjct: 1017 QRRQIQFLDF 1026


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 355 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 453
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,898
Number of Sequences: 5004
Number of extensions: 46379
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)