Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c07
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    35   1.8  
UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1; ...    34   3.1  
UniRef50_Q1QM75 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q9V9Y2 Cluster: CG15566-PA; n=1; Drosophila melanogaste...    33   9.4  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -2

Query: 654  FVTPSIC*PALLHTPADLHDAVPGYSGAHAAPPSTETVAAGGKNKCAWRSVQECDSVLRL 475
            F TP+   P     P  L  A P YSG H+ PP     + G  ++      Q  DS+ +L
Sbjct: 850  FFTPTRSTP---EEPMHLSPATPHYSGHHS-PPLLNQTSNGNPSQAVLEFAQYLDSLFKL 905

Query: 474  DGTGKVVIHLT 442
            DG+    + L+
Sbjct: 906  DGSSSPPLELS 916


>UniRef50_Q1DBM8 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 355

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 467 VPSNRNTLSHSCTERHAHLFLPPAATVSVEGGAACAPEYPGTASCKSAGVCSSAGQQMDG 646
           +P  R+  +   T  HA++ LPP   VSV+   +CA         + +G CS  G +MDG
Sbjct: 249 LPPGRHRATLKATLEHANITLPP---VSVDFELSCAARVANAGMSQMSG-CSDGGTEMDG 304


>UniRef50_UPI000023C9B6 Cluster: hypothetical protein FG00211.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG00211.1 - Gibberella zeae PH-1
          Length = 285

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
 Frame = +1

Query: 142 GQFCVIYFFLLTTSLLV--DNIRSGIKPRAFEK*RDVDVENTGAIILIDAVMTARILDLG 315
           G+ C +     TT L V  D I   I+        +  + N G II+I  ++   IL L 
Sbjct: 110 GEDCSLISVRKTTRLFVIGDFITFNIQGNGGGLLANEKLANAGKIIVIVGLIAQIILFLA 169

Query: 316 --VCCN-YYRRDRVVCRKSKTPTPQDVSWHSSVEPLFRT 423
             VCC  ++RR RV  R+S TP   ++ W + +  L+ T
Sbjct: 170 FVVCCVVFHRRFRVHLRQSHTPV--EIRWEAYLNMLYMT 206


>UniRef50_Q1QM75 Cluster: Putative uncharacterized protein; n=1;
           Nitrobacter hamburgensis X14|Rep: Putative
           uncharacterized protein - Nitrobacter hamburgensis
           (strain X14 / DSM 10229)
          Length = 331

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 344 VLCVGRARHLRRRMSPGIVPWNRCLEHNYTREIVR*MTTLPVPSNRNTLSHSCTERHAHL 523
           +L V  AR LR   S  ++ W+RC +    + +++  T  P+   R  L H   +R  ++
Sbjct: 38  LLSVAFARRLRENSSTYLIGWSRCGKSETIKRLLQEQTGQPISKKRIQLLHGNGKRFLYV 97

Query: 524 FLPPAAT 544
            L   +T
Sbjct: 98  DLMGGST 104


>UniRef50_Q9V9Y2 Cluster: CG15566-PA; n=1; Drosophila
           melanogaster|Rep: CG15566-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 214

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +2

Query: 464 PVPSNRNTLSHSCTERHAHLFLPPAAT-----VSVEGGAACAPEYPGTASCKSA 610
           P PS+ NT SHS ++ +A+   PP  T      ++  GAA A    GTA+  +A
Sbjct: 135 PNPSSHNTNSHSSSQANANANPPPNTTNNITAATLVAGAAAAAAATGTAATSTA 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,413,452
Number of Sequences: 1657284
Number of extensions: 13864587
Number of successful extensions: 34555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34539
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)