Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c07
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   3.6  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   6.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.2  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 322 CNYYRRDRVVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREMNDHFTGTV*SQY 486
           C  Y       +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 531 GKNKCAWRSVQECDSVLRLDGTGKVVIHL 445
           GK+K +W+ +Q CD     +   +VV H+
Sbjct: 4   GKSKFSWKDLQYCDKAGTQNSPLRVVAHI 32


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 720 KSDRRRLYCQSLDSTCNAPIILFVTPSI 637
           K D+  +Y ++LD  C A + L   PSI
Sbjct: 633 KHDKSYVYLETLDHLCTAMVDLLSDPSI 660


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 455  SFISRSHEYNYVLNNGSTELCQETS 381
            SF+S+++ Y   LN     +C+E S
Sbjct: 1163 SFLSKTNSYKIALNTVLVRICEEAS 1187


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 470 PSNRNTLSHSCTERHAHLFLPP 535
           P++    SH C   H+HL  PP
Sbjct: 617 PASVKLTSHKCNHLHSHLDKPP 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,559
Number of Sequences: 5004
Number of extensions: 57569
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)