Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c07
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    32   0.53 
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    29   2.8  
08_02_0053 + 11721658-11721689,11721960-11722710                       29   4.9  
03_05_1070 + 30125131-30127029                                         28   6.5  
02_01_0243 - 1601977-1602834,1602857-1603063                           28   6.5  
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     28   8.6  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 612 PADLHDAVPGYSGAHAAPPSTETVAAGGKNKCAWRSVQE 496
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 539 ATVSVEGGAACAPEYPGTASCKSAGVCSSAGQ 634
           AT +V GGA CA       +C S G CS+AGQ
Sbjct: 132 ATGTVRGGAPCA-RVAMYKACWSGGGCSTAGQ 162


>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 DVDVENTGAIILIDAVMTARI-LDLGVCCNYYRRDRVV 351
           D ++ +T AI   D  +T RI +D  VC +Y+R DR +
Sbjct: 80  DANIPSTSAI---DTTITDRIFMDFSVCPSYFRSDRTL 114


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 540 AAGGKNKCAWRSVQECDS-VLRLD 472
           A GG+ + AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 497 SCTERHAHLFLPPA-ATVSVEG---GAAC--APEYPGTASCKSAGVCSSA 628
           S +  ++++F P A AT  V G   GA C  A   P TASC S+G  ++A
Sbjct: 59  SSSSPYSYVFTPSATATTRVAGYCCGATCASASAAPATASCCSSGTRAAA 108


>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 464 PVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGAACAP 577
           P PS      HS   RH H   PP A  +  GG   AP
Sbjct: 117 PSPSPSQYDHHSSDHRHGHGHHPPHAGYNCGGGGRRAP 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,275,548
Number of Sequences: 37544
Number of extensions: 399964
Number of successful extensions: 1212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)