Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6c07
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    29   2.5  
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    29   2.5  
U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-dom...    29   4.4  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted 2-im...    29   4.4  

>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 NATRTYFCLQQQRFPSKGVPHVHLSTLEQR 596
           N T T  C+Q  +   + VPHVH+  L +R
Sbjct: 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 NATRTYFCLQQQRFPSKGVPHVHLSTLEQR 596
           N T T  C+Q  +   + VPHVH+  L +R
Sbjct: 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-domain
           protein protein4 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 440 IVR*MTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGAA 568
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG A+
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEAS 152


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 533 PAATVSVEGGAACAPEYPGTASCKSAGVC 619
           P  T S  G A C P  PG+ S K +G C
Sbjct: 272 PPGTSSPGGSAECIPCSPGSFSSKGSGQC 300


>AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-4 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 440 IVR*MTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGAA 568
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG A+
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEGEAS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,292
Number of Sequences: 27780
Number of extensions: 344499
Number of successful extensions: 913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)