Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b23
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   132   4e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    79   4e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    72   6e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    69   7e-13
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    29   0.53 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   4.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  132 bits (319), Expect = 4e-32
 Identities = 55/77 (71%), Positives = 68/77 (88%)
 Frame = +2

Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
           MREIVH+QAGQCGNQ+G+ FW  I+DEHG+D+ G+Y G S+ Q +R+NVY+NEA+ GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 560 PRAVLVDLEPGTMDAVR 610
           PRAVLVDLEPGTMDAV+
Sbjct: 61  PRAVLVDLEPGTMDAVK 77


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +2

Query: 383 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVP 562
           REI+ +QAGQCGNQIGS+FW+ +  EHG+   G  +  +   +DR +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 563 RAVLVDLEPGTMDAV 607
           RA+L+DLEP  ++ +
Sbjct: 63  RAILIDLEPRVVNNI 77


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = +2

Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLD--RINVYYNEASSGK 553
           MREI+ +  GQ G QIG+  WE+   EHG+   G    E+  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 554 YVPRAVLVDLEPGTMDAVR 610
           YVPR++ VDLEP  +D VR
Sbjct: 61  YVPRSIYVDLEPNVIDQVR 79


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
 Frame = +2

Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTG-------VYKGESDLQLDRINVYYNE 538
           MRE++ V  GQ G QIG+  WE+   EHG+   G       V+K  S L  D    +++E
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLN-DGFGTFFSE 59

Query: 539 ASSGKYVPRAVLVDLEPGTMDAVR 610
              GK+VPR++ VDLEP  +D VR
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVR 83


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 182  ILKVNYLLFSQLANYYFLNLTLKHLLSDRYML*NSY*AFSKSILKI 45
            +L ++ L+      Y  LNL LKH LS  Y+   +Y +FS   L I
Sbjct: 1155 LLSIHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHI 1200


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 191 KMN*CITELRFLSLHLLSVVHYISVFPRKKAISSDK 298
           K+N  ++++  ++ H +   HY+ ++ R++ I  DK
Sbjct: 3   KVNPSLSKVLLVTAHPIPTTHYLCLYCRRRKIKCDK 38


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 TSVLRNYDSYRYIYYQWCITY 260
           T VLRN  S+R +Y  W + +
Sbjct: 489 TEVLRNITSFRPLYRDWLVAF 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,016
Number of Sequences: 5004
Number of extensions: 54582
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)