Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b23
         (612 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    28   0.21 
AY146748-1|AAO12063.1|  279|Anopheles gambiae odorant-binding pr...    26   1.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   4.4  
AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P...    23   5.9  
AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosoma...    23   7.8  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 380 MREIVHVQAGQCGNQIGSKFWE 445
           MRE + V  GQ G QIG+  W+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22


>AY146748-1|AAO12063.1|  279|Anopheles gambiae odorant-binding
           protein AgamOBP41 protein.
          Length = 279

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 476 TGVYKGESDLQLDRINVYYNEASSGK 553
           TGVY     + +DR+N  Y E    K
Sbjct: 203 TGVYSDREGVSIDRLNAQYGEGHCEK 228


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 116  LMSN*ENNNLQAEKITNNLPSILQKKMN*CITELRFLSLHLLSVVHYISVFPRKKAISSD 295
            +  N +    Q  +ITN+   +LQ K+N    ++  LS ++  +   I    R    S D
Sbjct: 876  MQKNVDRYTEQINEITNSKVKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKD 935

Query: 296  KID 304
            KI+
Sbjct: 936  KIN 938


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 201 SVLRNYD-SYRYIYYQWCITYQCFQEK 278
           S ++NY  S+R +Y Q C+   CF E+
Sbjct: 447 SAIKNYPGSFRQVY-QECLDRSCFPEQ 472


>AY183375-1|AAO24765.1|  679|Anopheles gambiae NADPH cytochrome P450
           reductase protein.
          Length = 679

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 434 KFWEIISDEHGVDTTG 481
           KFW  + D  G+++TG
Sbjct: 225 KFWPTVCDYFGIESTG 240


>AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosomal
           protein protein.
          Length = 56

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 428 GSKFWEIISDEHGV 469
           GS+FW   S+ HG+
Sbjct: 17  GSRFWRACSNNHGM 30


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,898
Number of Sequences: 2352
Number of extensions: 12790
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)