Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6b23
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 150 7e-37
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 150 9e-37
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 148 4e-36
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 148 4e-36
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 148 4e-36
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 146 8e-36
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 110 7e-25
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 110 7e-25
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 73 2e-13
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 73 2e-13
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 73 2e-13
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 72 4e-13
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 72 4e-13
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 72 4e-13
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 71 5e-13
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 71 5e-13
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 71 5e-13
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 71 5e-13
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 70 1e-12
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 70 2e-12
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 68 5e-12
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 68 5e-12
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 64 8e-11
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 47 1e-05
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.86
AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear recep... 31 0.86
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 31 0.86
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 31 0.86
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 30 1.5
U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical pr... 28 6.0
U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine rece... 28 6.0
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 150 bits (364), Expect = 7e-37
Identities = 65/77 (84%), Positives = 72/77 (93%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVH+QAGQCGNQIG+KFWE+ISDEHG+D TG Y G+SDLQL+RINVYYNEAS GKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRA LVDLEPGTMD+VR
Sbjct: 61 PRACLVDLEPGTMDSVR 77
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 150 bits (363), Expect = 9e-37
Identities = 66/77 (85%), Positives = 72/77 (93%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVHVQAGQCGNQIG+KFWE+ISDEHG+ G YKGESDLQL+RINVYYNEA+ GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRAVLVDLEPGTMD+VR
Sbjct: 61 PRAVLVDLEPGTMDSVR 77
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 148 bits (358), Expect = 4e-36
Identities = 65/77 (84%), Positives = 73/77 (94%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVHVQAGQCGNQIGSKFWE+ISDEHG+ G +KGESDLQL+RI+VYYNEA++GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRAVLVDLEPGTMD+VR
Sbjct: 61 PRAVLVDLEPGTMDSVR 77
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 148 bits (358), Expect = 4e-36
Identities = 65/77 (84%), Positives = 72/77 (93%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVH+QAGQCGNQIGSKFWE+ISDEHG+D +G Y G+SDLQL+RINVYYNEA S KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRAVLVDLEPGTMD+VR
Sbjct: 61 PRAVLVDLEPGTMDSVR 77
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 148 bits (358), Expect = 4e-36
Identities = 65/77 (84%), Positives = 72/77 (93%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVH+QAGQCGNQIGSKFWE+ISDEHG+D +G Y G+SDLQL+RINVYYNEA S KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRAVLVDLEPGTMD+VR
Sbjct: 61 PRAVLVDLEPGTMDSVR 77
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 146 bits (355), Expect = 8e-36
Identities = 64/77 (83%), Positives = 73/77 (94%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MREIVHVQAGQCGNQIGSKFWE+ISDEHG+ G +KGE+DLQL+RI+VYYNEA++GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRAVLVDLEPGTMD+VR
Sbjct: 61 PRAVLVDLEPGTMDSVR 77
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 110 bits (265), Expect = 7e-25
Identities = 47/77 (61%), Positives = 61/77 (79%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
M+EI++VQ GQCGNQIG+KFWE IS+EHG+ T G YKG++ QL+RI YY E KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRA+LVDL+P +++ VR
Sbjct: 61 PRAILVDLDPESINYVR 77
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 110 bits (265), Expect = 7e-25
Identities = 47/77 (61%), Positives = 61/77 (79%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
M+EI++VQ GQCGNQIG+KFWE IS+EHG+ T G YKG++ QL+RI YY E KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PRA+LVDL+P +++ VR
Sbjct: 61 PRAILVDLDPESINYVR 77
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G +S + + ++++ SG+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 383 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLD--RINVYYNEASSGKY 556
RE++ + GQ G Q+G+ WE+ EHG+ G+ E L +D N +++E +GK+
Sbjct: 7 REVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAGKH 66
Query: 557 VPRAVLVDLEPGTMDAVR 610
VPRA++VDLEP +D +R
Sbjct: 67 VPRAIMVDLEPTPIDEIR 84
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G +S + + ++++ SG+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLD--RINVYYNEASSGK 553
MREIV + GQ G QIG+ WE+ EHG+ G+ ++ ++ N +++E SGK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 554 YVPRAVLVDLEPGTMDAVR 610
+VPRA+ VDLEP +D VR
Sbjct: 61 HVPRAIFVDLEPTVIDEVR 79
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 553
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 554 YVPRAVLVDLEPGTMDAVR 610
+VPRAV+VDLEP +D +R
Sbjct: 61 HVPRAVMVDLEPTVIDEIR 79
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 553
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 554 YVPRAVLVDLEPGTMDAVR 610
+VPRAV+VDLEP +D +R
Sbjct: 61 HVPRAVMVDLEPTVIDEIR 79
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGK 553
MRE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 554 YVPRAVLVDLEPGTMDAVR 610
+VPRAV+VDLEP +D +R
Sbjct: 61 HVPRAVMVDLEPTVIDEIR 79
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 71.3 bits (167), Expect = 5e-13
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G + + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 383 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYK-GESDLQLDRINVYYNEASSGKYV 559
RE V + GQ G QIG+ WE+ EHG+D G K E + + + +++E+ +GK+V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 560 PRAVLVDLEPGTMDAVR 610
PRA+ VDLEP +D +R
Sbjct: 66 PRAIYVDLEPTVLDEIR 82
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 71.3 bits (167), Expect = 5e-13
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G E + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 71.3 bits (167), Expect = 5e-13
Identities = 27/77 (35%), Positives = 45/77 (58%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G + + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 71.3 bits (167), Expect = 5e-13
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G E + ++++ +G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 61 PRSIFVDLEPTVVDEIR 77
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 383 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGES--DLQLDRINVYYNEASSGKY 556
RE++ + GQ G QIG+ WE+ EHG+ G + + D + + IN ++ E + GK+
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 557 VPRAVLVDLEPGTMDAVR 610
VPR + VDLEP +D VR
Sbjct: 68 VPRCLFVDLEPTVVDEVR 85
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 383 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDL--QLDRINVYYNEASSGKY 556
RE++ + GQ G QIG+ WE+ EHG+ G + L D + +++E SG++
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 557 VPRAVLVDLEPGTMDAVR 610
VPRAV+VDLEP +D +R
Sbjct: 61 VPRAVMVDLEPTVIDEIR 78
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +2
Query: 389 IVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRA 568
++ V GQCGNQ+ FW+ + DEHG++ G E D+ D+ ++ + +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMN-DKKDLLFYQADDDHYVPRA 65
Query: 569 VLVDLEPGTMDAV 607
VLVDLEP ++ +
Sbjct: 66 VLVDLEPRVINGM 78
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +2
Query: 389 IVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRA 568
++ V GQCGNQ+ FW+ + DEHG++ G E D+ D+ ++ + +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMN-DKKDLLFYQADDDHYVPRA 65
Query: 569 VLVDLEPGTMDAV 607
VLVDLEP ++ +
Sbjct: 66 VLVDLEPRVINGM 78
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 380 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 559
MRE++ + GQ G QIG+ WE+ EHG+ G E D + ++++ G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGT-SMEPDGNSGSLGTFFSDTGYGRHV 59
Query: 560 PRAVLVDLEPGTMDAVR 610
PR++ VDLEP +D +R
Sbjct: 60 PRSIFVDLEPTVVDEIR 76
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 458 EHGVDTTGVYKGES--DLQLDRINVYYNEASSGKYVPRAVLVDLEPGTMDAVR 610
EHG+ G + + D + + IN ++ E + GK+VPR + VDLEP +D VR
Sbjct: 5 EHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVR 57
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 574 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 479
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical
protein W05B5.3b protein.
Length = 336
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 574 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 479
E TG I+T RC I N + L+ A+ F NS
Sbjct: 61 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 92
>AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 336
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 574 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 479
E TG I+T RC I N + L+ A+ F NS
Sbjct: 61 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 92
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 574 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 479
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 574 ENGTGDIFTTRCLIVVNVYSVELQVALPFVNS 479
E TG I+T RC I N + L+ A+ F NS
Sbjct: 239 EKCTGPIYTDRCPITSNFIVIPLKAAIDFANS 270
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 8 NLYDVLSDHNKCISSILIY*MLNNYFTTYNDQIKGVLMSN*ENNNLQAEKITNNLP 175
+LY V + N+C S+ I+ LNN + I MS +N N + T LP
Sbjct: 309 SLYSVANQANQCFHSLTIFVHLNNQNCQFKKLIADTWMSTLKNMN-DSSLATRGLP 363
>U00052-3|AAK21426.1| 308|Caenorhabditis elegans Hypothetical
protein K02F3.4 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -1
Query: 519 ILSSCRSLSPL*TPVVSTPCSSEIISQNFDPI*FPHWPACTWTISRISNTIFTHAFT 349
IL+SCR+L T V P +I S P+ F H P C + T +T T
Sbjct: 42 ILNSCRNLPDCLTTTV--PQLHQINSAEQSPLQFTHQPNCDLIVVLDEQTTYTTTMT 96
>Z82278-2|CAB05254.1| 170|Caenorhabditis elegans Hypothetical
protein M162.2 protein.
Length = 170
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 406 GLHVDYFTHF*HNIHTRL--HNLTGNKVNNSKSDDVINFIGTYR 281
GL V Y T+F N+ N+T K N D+V NF+ +YR
Sbjct: 106 GLSVSY-TNFGSNVAQNYFSENITNTKWNTLGDDEVHNFVCSYR 148
>U55373-2|AAX88832.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein76, isoform b protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -2
Query: 284 SPFFLETLICNAPLIVNVTIRIVIP*YTSSFSFVILKVNYLLFSQLANYY 135
S F T+ + + I++++P ++F++ V+Y +S +NYY
Sbjct: 246 SSFSKRTIELQKKFFIGILIQVLVP-----YAFIVPSVSYCCYSVYSNYY 290
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 566 HGGHIYH*MPHCSKRLFCRAAGRSPLCKLRSCRRHARLRL 447
HGGH+ H +C AG C+ +H + RL
Sbjct: 5024 HGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKARL 5063
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,337,886
Number of Sequences: 27780
Number of extensions: 306161
Number of successful extensions: 747
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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