Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b13
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0624 + 4651995-4654715                                           30   2.0  
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533...    29   3.5  

>07_01_0624 + 4651995-4654715
          Length = 906

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 417 LQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVG 572
           L  SDF  L+  + + A++     V +  + Q +L A E EDI   + Y VG
Sbjct: 45  LLQSDFSMLQAFIAQVAVDRSNDMVLEAWMEQVRLAAHEAEDIVDEYTYLVG 96


>03_06_0531 +
           34552206-34552598,34552665-34552735,34553363-34553369,
           34553603-34553736,34553834-34554245,34554655-34554753,
           34555059-34555283,34555652-34556029,34556412-34556555,
           34556832-34556927,34557228-34557547,34557965-34558040
          Length = 784

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 486 AVSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSD 593
           A+++L + ++ +  +EK  I + FP QV V+  DS+
Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSE 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,833
Number of Sequences: 37544
Number of extensions: 324241
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)