Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b13
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070543-1|AAL48014.1|  263|Drosophila melanogaster LD24657p pro...   152   4e-37
AE013599-4001|AAF47306.1|  263|Drosophila melanogaster CG3776-PA...   152   4e-37
AY069062-1|AAL39207.1|  347|Drosophila melanogaster GH07743p pro...    31   2.0  
AE013599-3558|AAF46970.1|  347|Drosophila melanogaster CG3092-PA...    31   2.0  
AE013599-1884|AAS64854.1|  200|Drosophila melanogaster CG30067-P...    29   6.1  

>AY070543-1|AAL48014.1|  263|Drosophila melanogaster LD24657p
           protein.
          Length = 263

 Score =  152 bits (369), Expect = 4e-37
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 4/154 (2%)
 Frame = +3

Query: 198 PIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFI 377
           P  Q +K         +LP+LM+FP I+WPS +  +KNW+   FIIRPYFD EF L +FI
Sbjct: 51  PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYFDSEFQLKDFI 110

Query: 378 EASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAF 557
             +K A+Q+VS  L   D  +L+ LV  +AI  L+  + +LS++QR+ L I++ DI+ +F
Sbjct: 111 YGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLEIKESDIYLSF 170

Query: 558 PYQVGVIFDDSD----KRWVEITMCYHVLRGLKK 647
           PYQVG++FDD++    KR+VEITM +HV+RGL +
Sbjct: 171 PYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSE 204


>AE013599-4001|AAF47306.1|  263|Drosophila melanogaster CG3776-PA
           protein.
          Length = 263

 Score =  152 bits (369), Expect = 4e-37
 Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 4/154 (2%)
 Frame = +3

Query: 198 PIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFI 377
           P  Q +K         +LP+LM+FP I+WPS +  +KNW+   FIIRPYFD EF L +FI
Sbjct: 51  PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYFDSEFQLKDFI 110

Query: 378 EASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAF 557
             +K A+Q+VS  L   D  +L+ LV  +AI  L+  + +LS++QR+ L I++ DI+ +F
Sbjct: 111 YGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLEIKESDIYLSF 170

Query: 558 PYQVGVIFDDSD----KRWVEITMCYHVLRGLKK 647
           PYQVG++FDD++    KR+VEITM +HV+RGL +
Sbjct: 171 PYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSE 204


>AY069062-1|AAL39207.1|  347|Drosophila melanogaster GH07743p
           protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +3

Query: 318 FSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGAL-QNSDFKTLEGLVDKDAINALKTAVS 494
           F+ + ++  +D+EFS  +F+E +K A  +++  + Q S  K  E           +  + 
Sbjct: 92  FNLWKLKWLWDREFSEPDFLEGAKQAAIVMTDIIRQQSADKISEYTTPVGFQQITRDMLL 151

Query: 495 QLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSDKRWVEITMCYHVLRGLKKYE 653
             + ++ QL+  E+E +  A P +V     +  +++  I M +  LR  K ++
Sbjct: 152 SRNDTRLQLVRFEREHLRRAIPMKVAT-RQNFGRKYAFIDMLFVGLRNTKDFD 203


>AE013599-3558|AAF46970.1|  347|Drosophila melanogaster CG3092-PA
           protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +3

Query: 318 FSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGAL-QNSDFKTLEGLVDKDAINALKTAVS 494
           F+ + ++  +D+EFS  +F+E +K A  +++  + Q S  K  E           +  + 
Sbjct: 92  FNLWKLKWLWDREFSEPDFLEGAKQAAIVMTDIIRQQSADKISEYTTPVGFQQITRDMLL 151

Query: 495 QLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSDKRWVEITMCYHVLRGLKKYE 653
             + ++ QL+  E+E +  A P +V     +  +++  I M +  LR  K ++
Sbjct: 152 SRNDTRLQLVRFEREHLRRAIPMKVAT-RQNFGRKYAFIDMLFVGLRNTKDFD 203


>AE013599-1884|AAS64854.1|  200|Drosophila melanogaster CG30067-PB,
           isoform B protein.
          Length = 200

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = +3

Query: 321 SNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQN--SDFKTLEGLVDKDA--INALKTA 488
           +NF+I+   D +F+ +  ++ ++     V   L+   S+  T++      A     +++ 
Sbjct: 74  ANFLIKCRLDCDFNASSVLQGNRLIQAKVRPMLERAFSNEPTIDAYESNFAKCSTVVRSK 133

Query: 489 VSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSDKRW 602
             +LS   RQ  A ++  +FY+      +IF   DK W
Sbjct: 134 YQELSPLSRQSDACDRHALFYSLCAYARLIFTCPDKMW 171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,487,379
Number of Sequences: 53049
Number of extensions: 592630
Number of successful extensions: 1458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)