Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b11
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   1.00 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    24   3.0  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   5.3  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    22   9.3  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 103  HNNYI-ISNPCIEFCNHKSTNKKYD 174
            HNN I ++ P      HK  NKKYD
Sbjct: 1110 HNNLIAVTPPSRTGVEHKEENKKYD 1134


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 154 SYDYKTQYTDYL*YSCCDKKAIIK 83
           SYDY+ QY+     +C   KAI K
Sbjct: 628 SYDYEMQYSSLSIKNCDSDKAIRK 651


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 184 FFICHTFYLYSYDYKTQYTDYL*YSCCDKKAIIKLT 77
           FF     Y+Y   Y T+Y   + +S C  +A++ LT
Sbjct: 58  FFRTLGHYIYVGAYPTRYAFLVFWSFCIVQAVMYLT 93


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 166 FYLYSYDYKTQYTD 125
           F+L  Y YK QY D
Sbjct: 342 FFLRCYPYKPQYAD 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,812
Number of Sequences: 5004
Number of extensions: 8914
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)