Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b11
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    25   9.9  
U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    25   9.9  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    25   9.9  

>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 169 TFYLYSYDYKTQYTDYL*YSCCDKKAIIKLTKLST 65
           T YL + D + +Y  YL   CC+    I    L T
Sbjct: 50  TLYLTNRDLRRKYILYLVLDCCELLDAISYVLLGT 84


>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 189 FFFSSVILFICTLMITKLNTRIT 121
           FFF  + + +CT++I  +  RIT
Sbjct: 9   FFFLLLTMLVCTIVIFSMAPRIT 31


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 136 EFCNHKSTNKKYDR 177
           EFC+ KS ++K+DR
Sbjct: 591 EFCSQKSVSEKFDR 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,749,939
Number of Sequences: 27780
Number of extensions: 51925
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)