Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6b09
(278 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07) 28 1.0
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 27 3.1
SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 26 4.1
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 26 4.1
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 26 4.1
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6) 26 5.4
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053) 25 7.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68) 25 9.4
SB_36646| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 25 9.4
>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
Length = 592
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 53 FDTVLYDNIRTVLK---DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 214
FDT+ +R + DN+ L I+ SS++ R V +R + SD VYVK
Sbjct: 349 FDTIAPSTVRPKTREMTDNQVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405
>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 187 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 65
R+MA+ + + L GR R RE++ VLK P VV +
Sbjct: 30 RSMAQSFLSGISLDGRIMREPRTRERNDEKVLKPTPTVVTE 70
>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 12 STSSIPPATFQLLPSIPYCTTTSGR 86
+T SIP A PS+PY TT R
Sbjct: 323 TTGSIPTAITSSEPSVPYSTTRDSR 347
>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 218 KILRRLQRSRKKHGENLPTGGRSRRKG-EKLE 126
K LR+ Q ++ K + P GGRS R EKL+
Sbjct: 713 KALRKAQETKGKLADGKPVGGRSGRPAIEKLQ 744
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 23 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 121
D Y P D V +N+ TVL DNK L++
Sbjct: 309 DLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341
>SB_33544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 244 PKTV---KNKGLRFYVDSKGVGRNMARI 170
PKT+ KNKGL ++SKG+G R+
Sbjct: 173 PKTLDLLKNKGLTLNMESKGIGPTEYRV 200
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 142 RERSLNRCREKSSFVVL---KNRPDVVVQYGIEGRS*KVAGGIEDVD 11
R RS RCR KSS + K++ + + +Y ++ VAG VD
Sbjct: 364 RSRSRRRCRSKSSSIASSPDKSKDEDMSKYMLDASDKPVAGAKPTVD 410
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 50 PFDTVLYDNIRTVLKDNKTALLS 118
P D + +N+ +VL DNKT L+
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLA 2308
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 50 PFDTVLYDNIRTVLKDNKTALLS 118
P D + +N+ +VL DNKT L+
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLA 1406
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 50 PFDTVLYDNIRTVLKDNKTALLS 118
P D + +N+ +VL DNKT L+
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLA 2314
>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 226 KGLRFYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 71
+G F V S VG+N ++ G L R EK ++++K PD+V
Sbjct: 222 QGTVFKVMSMNVGKNKKEVHAKDDQKGKGPAELRR--EKVVYLLIKEEPDLV 271
>SB_45760| Best HMM Match : Drf_FH1 (HMM E-Value=3.6)
Length = 173
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 15 TSSIPPATFQLLPSIPYCTTT 77
+S+IP TF +IPYCT T
Sbjct: 52 SSTIPYCTFTGSSTIPYCTIT 72
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 15 TSSIPPATFQLLPSIPYCTTT 77
+S+IP TF +IPYCT T
Sbjct: 85 SSTIPYCTFTGSSTIPYCTIT 105
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 15 TSSIPPATFQLLPSIPYCTTT 77
+S+IP TF +IPYCT T
Sbjct: 41 SSTIPYCTFTGSSTIPYCTFT 61
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 15 TSSIPPATFQLLPSIPYCTTT 77
+S+IP TF +IPYCT T
Sbjct: 74 SSTIPYCTFTGSSTIPYCTFT 94
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 15 TSSIPPATFQLLPSIPYCTTT 77
+S+IP TF +IPYCT T
Sbjct: 107 SSTIPYCTFTGSSTIPYCTFT 127
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 18 SSIPPATFQLLPSIPYCTTT 77
S+IP TF +IPYCT T
Sbjct: 31 STIPYCTFTGSSTIPYCTFT 50
>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 148 RDLPPVGRFSPCFFRLLWSLRKILIPYSSQ 237
RDLPP+ F+P + +L ILIP +Q
Sbjct: 360 RDLPPLFNFTPQELSVKPALNTILIPPHAQ 389
>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
Length = 636
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 PFDTVLYDNIRTVLKDN-KTALLSASI 127
P D V +N+ TVL DN K L+S I
Sbjct: 273 PVDAVWIENMNTVLDDNKKLCLMSGEI 299
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 239 NCEE*GIKILRRLQRSRKKHGENLPTGGRSRRKGEKL 129
NCE ++ ++ R RK H N GR + G K+
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKI 1341
>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 218 KILRRLQRSRKKHGENLPTGGRSRR 144
K LR+ Q ++ K + P GGRS R
Sbjct: 444 KALRKAQETKGKLADGKPVGGRSGR 468
>SB_59297| Best HMM Match : zf-DNL (HMM E-Value=0.68)
Length = 629
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 218 KILRRLQRSRKKHGENLPTGGRSRR 144
K LR +Q R K + P GGRS R
Sbjct: 380 KALRTVQEKRGKLPDGKPVGGRSGR 404
>SB_36646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 23 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFG 202
+PSC DTV + + T K K L+ S EI+ +D H D G
Sbjct: 10 NPSCRSYNIRHDTVC-ELLNTTKKSAKEYLIKHSGSNHYHDPEIFTSCLDFLHAGYDKNG 68
Query: 203 VY 208
++
Sbjct: 69 IF 70
>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 208 VDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSF--VVLKNRPDVV 71
+D G+G +R + L + LGG E + +KS VL+++PD V
Sbjct: 240 IDRSGLGTVDSRTFFLTLGLGGNE-GKEKQHQKSPIKEQVLEDKPDSV 286
>SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 103 NCSSLCIYSSFSPFLRDLPPVGRFS 177
N + LC Y S + FL+DLP V +S
Sbjct: 318 NANHLC-YQSLAEFLKDLPLVPYYS 341
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 157 PPVGRFSPCFFRLLWSLRK 213
P VG+F FFR WSL K
Sbjct: 1134 PQVGQFFRRFFRPKWSLEK 1152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,888
Number of Sequences: 59808
Number of extensions: 135705
Number of successful extensions: 425
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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