Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b09
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    28   0.86 
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   2.0  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   2.0  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    26   4.6  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    26   4.6  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    26   4.6  
U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucos...    25   6.1  
U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucos...    25   6.1  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    25   6.1  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    25   6.1  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    25   6.1  
DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide glyc...    25   6.1  
AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical ...    25   6.1  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    25   6.1  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 17  VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHV-SSD 193
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 194 SFGVYVKS*SLIL 232
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 162 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 55
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 162 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 55
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 95  DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS 217
           +N  +LL A +  +LP S ++  L+D+RH+       Y+++
Sbjct: 42  ENLVSLL-ALLSDTLPPSTLFTVLLDTRHIQLKQLKFYLRA 81


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 224 GIKILRRLQRSRKKHGENLPTGGRSRRKGE 135
           G  +  R    RKKHG ++   GR RR G+
Sbjct: 97  GNDMKHRENMDRKKHGTHVDHHGRVRRNGD 126


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 187 FRLLWSLRKILIPYSSQFWVVSFIAL*Q 270
           F  LW++  I++   S +W+ +F  L Q
Sbjct: 471 FETLWTINGIVVALGSIYWIANFSRLRQ 498


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 203 LQRSRKKHGENLPTGGRSRRKGEKLE 126
           + + RK+HG+NL   G + +K ++LE
Sbjct: 2   VSKKRKEHGKNLGVLGPAAKKQKRLE 27


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 218 KILRRLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQF 102
           ++L  L   +K  GE +P  GRS     K+E M  +  F
Sbjct: 761 QLLNTLNEMKKALGEGVPKSGRSLNSTCKIETMTNKTPF 799


>U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform d protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 343 FSPLQFMLIWLLRELTAPF 361


>U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform a protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 410 FSPLQFMLIWLLRELTAPF 428


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 421 FSPLQFMLIWLLRELTAPF 439


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 421 FSPLQFMLIWLLRELTAPF 439


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 421 FSPLQFMLIWLLRELTAPF 439


>DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 FSPCFFRLLWSLRKILIPY 228
           FSP  F L+W LR++  P+
Sbjct: 343 FSPLQFMLIWLLRELTAPF 361


>AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4a protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 100 QNCSSLCIYSSFSPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQF 240
           Q+ +S  IY +    L+ + P+   + C+F++L  + K +I  ++QF
Sbjct: 219 QSENSRKIYGTTVMLLQFVVPMAVITYCYFKILQKVSKDMIIQNAQF 265


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 100 QNCSSLCIYSSFSPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQF 240
           Q+ +S  IY +    L+ + P+   + C+F++L  + K +I  ++QF
Sbjct: 219 QSENSRKIYGTTVMLLQFVVPMAVITYCYFKILQKVSKDMIIQNAQF 265


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +2

Query: 14  YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSD 193
           Y  D +   +T    T+      TV +  KT   ++++     + E  + +    H   D
Sbjct: 247 YKEDTTTTSTTDTTTTISTTKNTTVTQKPKTNTTNSTVTIEETTLE-EKTIATGNHTEMD 305

Query: 194 SFGVYVKS 217
            FGVY++S
Sbjct: 306 EFGVYIES 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,962,115
Number of Sequences: 27780
Number of extensions: 104228
Number of successful extensions: 332
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)