Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b07
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    28   1.0  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   5.3  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 546 GSTSIRSKNKLSHRTHTKTFKFFLFNVLKRKYN 448
           G+T++ S + L+  +   TFKF +F+  KRKYN
Sbjct: 134 GTTNVISASNLTTTSEIPTFKFPIFS--KRKYN 164


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -3

Query: 624 FVDNVK*IKTHKTKN*QCFLFRTKTIGSTSIRSKNKLSHRTHTKTFKFFLFNVLKRK 454
           F+DN+K +   K++  QCF        +  +  +N+ +H+   K ++ +L N+L R+
Sbjct: 264 FLDNLKSVDDRKSRLLQCFESHL-NYKAWHLEFENE-AHQYEIKGYRLWLQNILNRE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,245
Number of Sequences: 5004
Number of extensions: 32764
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)