Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b07
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38476| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   27   9.9  

>SB_38476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 369 VFVLPNQDKCFTSQK 413
           +  LPNQDKCFTS K
Sbjct: 138 ITTLPNQDKCFTSTK 152


>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1178

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 369 VFVLPNQDKCFTSQK 413
           +  LPNQDKCFTS K
Sbjct: 530 ITTLPNQDKCFTSTK 544


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 561 RTKTIGSTSIRSKNKLSHRTHT 496
           +TKT G T   SK K SH+T T
Sbjct: 63  KTKTKGKTRTSSKTKTSHKTKT 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,728
Number of Sequences: 59808
Number of extensions: 208248
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)