Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b06
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   0.87 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    27   2.7  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   4.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   4.7  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   6.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   8.1  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   8.1  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 378 TATPVSLTV*RDEVPLKNPTPQLILN*RYRDLVLMITFPITLHHFLISVVTIIIMA 545
           TATP S +     +P   P  Q +L   YR++V  ITF +      ++V+   I A
Sbjct: 640 TATPTSTS--HIPIPTVLPPTQPVLEPSYREIVAFITFFLLFAFIFVAVIWTWISA 693


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 102 LEIQSVPRREPNKFQKDH*RKRARPSVPSN 13
           L  +  P++  N ++K H R+++R S+PS+
Sbjct: 4   LNQEETPKKTKNPYRKGHSRRQSRHSIPSD 33


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 392 NWSSRPTTAESHWWWTHDYNVDAVD-SSCCCYWLNWPYFV 276
           +WSS          W H +++   D SSCCC+   + + V
Sbjct: 207 DWSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLV 246


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 317 SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGPS 424
           SPR    +  ST + T +L D YSS ++ +++ GP+
Sbjct: 320 SPRNLHDSNVSTFNNTTILDDDYSSSMH-ISKTGPT 354


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -2

Query: 543 PLLLS*RRKLESDEVLLEKLSL--KRDRGIVSLES 445
           P+L   R KLES+ V+LE+  L  K+ + ++ LE+
Sbjct: 279 PILSDIRSKLESERVVLEQSDLLHKKHQMLIQLEN 313


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 267 VTLRNNNTL*TRISHVVSCNRHNFQTVITHYIMISFSLFP 148
           +T +N NT   RI+ V           +T  + + F+LFP
Sbjct: 108 LTKKNENTFDRRIAGVTFYRSQMMLVTVTCILAVDFTLFP 147


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 181 CNHCLKIMSVAGYYVTYPGLKSVIVSQRYYKI 276
           CN    ++S+ GY  +YP   S I     Y I
Sbjct: 652 CNESTNMLSLVGYMDSYPEATSNIQKMNSYHI 683


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 361 HTGGGRTIITLTPWTRRAV 305
           H  G    IT+TPWTR  V
Sbjct: 97  HIHGAALDITITPWTRMEV 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,050
Number of Sequences: 5004
Number of extensions: 42130
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)