Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b06
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    31   0.89 
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    28   6.3  
06_03_1294 - 29080347-29081447                                         28   6.3  
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328     27   8.3  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 293 LTSNNSTTSPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGPSEKSDTAVDSKLTIP 466
           +TS +  T  RRQR   AS  S+    S  +S  I+   R+G     +T +DS   +P
Sbjct: 603 ITSTSHHTRRRRQRSRTASIDSLEDAFSQEFSQLIDLARRQG----RETDIDSSSVLP 656


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 290 SLTSNNSTTSPRRQRYNRASTT 355
           S++ +N   SPRR+R N+ STT
Sbjct: 304 SISDDNHRQSPRRERMNKPSTT 325


>06_03_1294 - 29080347-29081447
          Length = 366

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
 Frame = -3

Query: 386 SSRPTTAESHWWWTHDYNVDAVDSSC--CCYWLNW 288
           SS  T   SHWWW        +  SC    YW  +
Sbjct: 111 SSTSTPMGSHWWWPASRRPPIIPPSCPGDVYWTTY 145


>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
          Length = 448

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 PRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGPSEKSDTAVDSK 454
           PRR R  RAS+    +    GY S ++R  + GP  ++    D K
Sbjct: 39  PRRGRSTRASSRRGRRRPRSGYQSRVSRAEQVGPEIRTGFLKDGK 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,286,328
Number of Sequences: 37544
Number of extensions: 260121
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)