Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b06
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)             29   3.7  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             29   3.7  
SB_59405| Best HMM Match : Ribosomal_S25 (HMM E-Value=7.2)             29   3.7  
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)               28   4.9  
SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)                     28   4.9  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   28   4.9  

>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I  ++ P    HC+ +VP
Sbjct: 477 IGKVVSAEESNYCTVVTEHGRIKGTIAPNRLNHCTSSVP 515


>SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
          Length = 576

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I  ++ P    HC+ +VP
Sbjct: 135 IGKVVSVEESNYCTVVTEHGRIKGTIAPNRLNHCTSSVP 173


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I  ++ P    HC+ +VP
Sbjct: 130 IGKVVSVEESNYCTVVTEHGRIKGTIAPNRLNHCTSSVP 168


>SB_59405| Best HMM Match : Ribosomal_S25 (HMM E-Value=7.2)
          Length = 145

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I  ++ P    HC+ +VP
Sbjct: 92  IGKVVSVEESNYCTVVTEHGRIKGTIAPNRLNHCTSSVP 130


>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
          Length = 414

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +3

Query: 27  TAALACASDLFEICSVRA*VRSESLDR-PSLGPL-VNNECRKLGIVKMKSLCSV*SLFEN 200
           T+ LA A  LF +  + A V   S++  P  G       CR      +   C+  S FE 
Sbjct: 126 TSMLARAIALFSVFMIIASVLVSSVETLPQWGIRDCGKSCRNQTSGDLLKDCN--STFEK 183

Query: 201 YVGCRILRDLSWFKECYCFSTLL*NYKI 284
           Y  C   +++  F E  C+S  L  Y I
Sbjct: 184 YEKCSKTKEIFMFLETICYSWFLFEYVI 211


>SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I  ++ P   +HC+ +VP
Sbjct: 384 IGKVVSVKESNYCTVVTIHGRIKGTIAPNWLSHCTSSVP 422


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I   + P    HC+ +VP
Sbjct: 195 IGKVVSVGESNYCTVVTEHGRIKGKIAPNRLNHCTSSVP 233


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 231 ISHVVSCNRHNFQTVITHYIMISFSLFPACGTHCSLAVP 115
           I  VVS    N+ TV+T +  I   + P    HC+ +VP
Sbjct: 261 IGKVVSVGESNYCTVVTEHGRIKGKIAPNRLNHCTSSVP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,644
Number of Sequences: 59808
Number of extensions: 315366
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)