Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b06
         (586 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4292|AAO41611.2|  904|Drosophila melanogaster CG33204-P...    36   0.040
AJ400900-1|CAB96426.1|  175|Drosophila melanogaster D-Titin prot...    29   6.1  
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    29   6.1  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    29   6.1  

>AE014297-4292|AAO41611.2|  904|Drosophila melanogaster CG33204-PA
           protein.
          Length = 904

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 320 PRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGPSEKSD 436
           P+R+    A+  SVTQLLS+  +S + R  RR PSE+ D
Sbjct: 43  PQRRYMRSATAASVTQLLSESCNSLLQRF-RRNPSERPD 80


>AJ400900-1|CAB96426.1|  175|Drosophila melanogaster D-Titin
           protein.
          Length = 175

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = -2

Query: 519 KLESDEVLLEKLSLKRDRGIVSLEST 442
           KLE+ +V+L+ +  +RD+GI+SL +T
Sbjct: 136 KLEAAKVVLKSIKTERDQGIMSLGAT 161


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = -2

Query: 519  KLESDEVLLEKLSLKRDRGIVSLEST 442
            KLE+ +V+L+ +  +RD+GI+SL +T
Sbjct: 4924 KLEAAKVVLKSIKTERDQGIMSLGAT 4949


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
            isoform C protein.
          Length = 18074

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = -2

Query: 519  KLESDEVLLEKLSLKRDRGIVSLEST 442
            KLE+ +V+L+ +  +RD+GI+SL +T
Sbjct: 4924 KLEAAKVVLKSIKTERDQGIMSLGAT 4949


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,354,324
Number of Sequences: 53049
Number of extensions: 454239
Number of successful extensions: 1088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)