Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b06
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   3.2  
X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium ...    28   4.2  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    28   4.2  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical...    28   4.2  
AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical...    28   4.2  
Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 371 TAESHWWWTHDYNVDAVDSSCCCYWLNW 288
           T ES+WW    Y  +  DSS  CY  +W
Sbjct: 400 TCESYWWKNLFYINNMGDSSTACYAPSW 427


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 69  SVRA*VRSESLDRPSLG-PLVNNECRKLGIVKMKSL-CSV*SLFENYVGCRILRDLSWFK 242
           +V A +R+E  D P    P+++ + R +  +  + + C++    +  +   I R L WF+
Sbjct: 509 TVDAEIRTEESDNPFKRIPVIDAQKRLIDAIFQRQIDCNIEDSEKQRINIDIQRGLKWFQ 568

Query: 243 EC 248
           EC
Sbjct: 569 EC 570


>X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 QLLSDGYSSFINRLTRRGPSEKSDTAVDSKLTIP 466
           +L+S   SSF+ R  RR PS+K+   V++   +P
Sbjct: 258 RLISGPLSSFVRRSPRRSPSKKTRENVENGAGLP 291


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  ITWHRRPRSL-ALVIFLKFVRFAPRYALNL 99
           ++WH +P+SL A VIF+ FV +   Y + L
Sbjct: 618 LSWHSKPKSLTAYVIFMLFVYYFQIYFIPL 647


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  ITWHRRPRSL-ALVIFLKFVRFAPRYALNL 99
           ++WH +P+SL A VIF+ FV +   Y + L
Sbjct: 704 LSWHSKPKSLTAYVIFMLFVYYFQIYFIPL 733


>AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4b protein.
          Length = 873

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 QLLSDGYSSFINRLTRRGPSEKSDTAVDSKLTIP 466
           +L+S   SSF+ R  RR PS+K+   V++   +P
Sbjct: 258 RLISGPLSSFVRRSPRRSPSKKTRENVENGAGLP 291


>AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4a protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 QLLSDGYSSFINRLTRRGPSEKSDTAVDSKLTIP 466
           +L+S   SSF+ R  RR PS+K+   V++   +P
Sbjct: 258 RLISGPLSSFVRRSPRRSPSKKTRENVENGAGLP 291


>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 281 NMASLTSNNSTTSPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGPSEKSDTAVDSK 454
           N  + +  NSTTS      +  S+ S +  ++   ++        GPSE+ D  VD K
Sbjct: 330 NSTTSSIQNSTTSMISSTISSTSSNSTSSTINVPKTAAPEEEIEEGPSEEKDENVDEK 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,457,244
Number of Sequences: 27780
Number of extensions: 233945
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)