Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6b06
(586 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 24 0.96
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 24 0.96
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 0.96
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 24 0.96
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 24 0.96
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 0.96
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 24 0.96
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 0.96
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 24 0.96
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 24 0.96
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 0.96
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 1.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 24 1.3
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 2.2
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 2.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 2.9
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.9
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 2.9
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 3.9
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 6.7
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 6.7
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 6.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.9
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.2 bits (50), Expect = 0.96
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + AS TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKLESSDDISLFRGP 118
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 408 RDEVPLKNPTPQLILN*RYRDLV 476
+ ++P +P P+L +N YRD V
Sbjct: 1282 QQQLPPSSPQPRLTVNHAYRDAV 1304
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.8 bits (49), Expect = 1.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 299 SNNSTTSPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
S + SP + + S TS T +LSD S + RGP
Sbjct: 83 SKTKSKSPESRDRSNTSNTSKTFILSDKLESSDDTSLFRGP 123
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.0 bits (47), Expect = 2.2
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 281 NMASLTSNNSTTSPR--RQRYNRASTTSVTQLLSDGYSSFINRLTR 412
++ S+TS NST+SP+ +R A + T + + +I+R +R
Sbjct: 404 SIESITSVNSTSSPKPFPRRATLAQLHNFTTMTPQEIAQWIDRRSR 449
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + S TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDISLFRGP 118
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + S TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDISLFRGP 118
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + S TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPGSRDRSNTSNTSKTVILSDKLESSDDISLFRGP 118
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.6 bits (46), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 KLQNMASLTSNNSTT-SPRRQRYNRASTTSVTQLLSDGYSSFINRLTRRGP 421
+++ + L S S + SP + + S TS T +LSD S + RGP
Sbjct: 68 RIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKLESSDDISLFRGP 118
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 296 TSNNSTTSPRRQRYNRAS 349
T+ + T S RRQRYN A+
Sbjct: 93 TTTSVTPSCRRQRYNIAA 110
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.4 bits (43), Expect = 6.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 362 SHWWWTHDYNVD 327
S W+ HDYN++
Sbjct: 206 SGWYLNHDYNLE 217
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.4 bits (43), Expect = 6.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 362 SHWWWTHDYNVD 327
S W+ HDYN++
Sbjct: 206 SGWYLNHDYNLE 217
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 21.4 bits (43), Expect = 6.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 361 HTGGGRTIITLTPWTRR 311
HTG G +IIT+ P TR+
Sbjct: 85 HTGFGGSIITIPP-TRK 100
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 113 IDIAWFPFDDQHCDMKFGSWTY 134
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 113 IDITWFPFDDQHCDMKFGSWTY 134
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 113 IDIAWFPFDDQHCDMKFGSWTY 134
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 113 IDITWFPFDDQHCDMKFGSWTY 134
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 181 IDITWFPFDDQHCDMKFGSWTY 202
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Frame = -2
Query: 168 ISFSLFPACGTHCSLAVPDWVY 103
I + FP HC + W Y
Sbjct: 181 IDITWFPFDDQHCDMKFGSWTY 202
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,938
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 29
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -