Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZQB6 Cluster: Fibronectin type III domain protein; n=...    31   5.0  
UniRef50_A3YFM0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  
UniRef50_A6QTE6 Cluster: Predicted protein; n=1; Ajellomyces cap...    30   8.7  

>UniRef50_A1ZQB6 Cluster: Fibronectin type III domain protein; n=1;
           Microscilla marina ATCC 23134|Rep: Fibronectin type III
           domain protein - Microscilla marina ATCC 23134
          Length = 549

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -3

Query: 160 TVDTFRNRTRTASGHKQ-NDVGKLN----ETIREIVLYYDNTIHYR 38
           T DT +NR  T S HK+ N   K+N     TI+E+V   DN I YR
Sbjct: 333 TYDT-KNRLETISYHKRANSFYKVNYNGDNTIKEVVYTLDNVIKYR 377


>UniRef50_A3YFM0 Cluster: Putative uncharacterized protein; n=1;
           Marinomonas sp. MED121|Rep: Putative uncharacterized
           protein - Marinomonas sp. MED121
          Length = 320

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 81  IVSFNLPTSFCLWPDAVRVRFLNVSTVSGLIPEYNPLQII 200
           ++SF LPT   LWP+  R+  L  +   G+   +  LQ +
Sbjct: 60  LLSFYLPTPAILWPEVTRMLMLGFANGVGIFAYFYALQTL 99


>UniRef50_A6QTE6 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 172

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 148 FRNRTRTASGHKQNDVGKLNETIREIVLYYDNTIH 44
           F+ +   A  +K    GKL+ET+RE+  +Y+  ++
Sbjct: 101 FQEKLNIAHPYKAAGAGKLSETVRELAAFYEVVVY 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,801,689
Number of Sequences: 1657284
Number of extensions: 3331302
Number of successful extensions: 8249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8248
length of database: 575,637,011
effective HSP length: 55
effective length of database: 484,486,391
effective search space used: 10174214211
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)