Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   1.8  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   2.3  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    24   3.1  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    23   4.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    22   9.5  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    22   9.5  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  RNIELFLVLFRLIYRH 105
           +NIELF+ L+  +YRH
Sbjct: 331 KNIELFIRLYSQMYRH 346


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 64  YYDNTIHYRLLTN 26
           YYDNTI +R++ N
Sbjct: 490 YYDNTIFHRIIKN 502


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 7  FVLCLVNLLIICSVSCCRNIELFLVLFRL 93
          F   L+ +L ICS+ C   +  FLV F L
Sbjct: 5  FKTYLLYILKICSIPCLAYVVNFLVCFVL 33


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 196 ICSGLYSGINPLTVDTFRNRTRTASGHKQN 107
           IC+GL   ++   +DT + R +   G  +N
Sbjct: 90  ICAGLAVDLSLFPIDTLKTRLQAKGGFVKN 119


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 130 FGFDS*TYQLLVG*YPNITRYKSFINKAFL 219
           F +DS    LL+  +  IT Y+S  + AF+
Sbjct: 666 FSYDSPDVNLLIEQFYEITSYESNYDDAFV 695


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 178 SGINPLTVDTFRNRTRTASGHKQNDVGKLNETIREIVL 65
           S +  + V+   N + T        V  +NE  RE++L
Sbjct: 89  SALKDINVEYQSNLSATGESVNTTTVSAINEDTREVIL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,956
Number of Sequences: 5004
Number of extensions: 15766
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)