Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390     27   2.8  
07_01_0691 - 5224260-5224277,5224663-5224733,5224774-5224953,522...    26   3.7  
01_01_0421 + 3181139-3184207                                           26   3.7  
12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618           26   4.9  
12_01_0686 - 5855216-5858263                                           26   4.9  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    25   8.6  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    25   8.6  

>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
          Length = 397

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 148 TYQLLVG*YPNITRYKSFINKAFLIKKK 231
           +Y+LL G  PN++ +  F +K F++ K+
Sbjct: 173 SYELLSGKKPNVSYFHVFGSKCFILSKR 200


>07_01_0691 -
           5224260-5224277,5224663-5224733,5224774-5224953,
           5226391-5227072
          Length = 316

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 229 FFLLKKLY**MICSGLYSGINPLTVDTF 146
           +FL+  LY  MI SGL +GI+P  + +F
Sbjct: 58  YFLMDALYDAMIISGLGAGIHPDFIFSF 85


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 148  TYQLLVG*YPNITRYKSFINKAFL 219
            +Y  LVG  P  T++ +F+N +FL
Sbjct: 931  SYNRLVGRIPESTQFSTFLNNSFL 954


>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
          Length = 748

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 TYQLLVG*YPNITRYKSFINKAFL 219
           +Y +LVG  PN  ++ +F N +FL
Sbjct: 662 SYNMLVGRIPNSYQFSTFSNNSFL 685


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 148  TYQLLVG*YPNITRYKSFINKAFL 219
            +Y +LVG  PN  ++ +F N +FL
Sbjct: 929  SYNMLVGRIPNSYQFSTFSNNSFL 952


>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
            16962118-16962304,16962567-16962759,16962864-16963137,
            16963215-16963374,16963985-16964199,16964784-16964876,
            16965192-16965260,16965293-16965445,16965534-16965737,
            16966416-16966691,16967336-16967431,16967585-16967788,
            16967877-16968069,16968229-16968374,16968771-16969425,
            16971462-16971774,16971989-16972139,16972602-16973815,
            16973933-16974182,16974784-16975035
          Length = 1934

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 199  MICSGLYSGINPLTVDTFRNRTRTASGHKQNDVGKLN 89
            M+C+ L +G+ P  V   R   RTA   K  DVGK++
Sbjct: 1777 MVCAVLCAGLYPNVVQCKRRGKRTAFYTK--DVGKVD 1811


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 76  LVLFRLIYRHRFACGRTPFGFDS*TYQLLVG*YPNIT 186
           L L  +I+ H   C  +   F    YQLL+  YP I+
Sbjct: 408 LPLLTMIHTHCVFCSESNEAFIEGYYQLLLNRYPRIS 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,072,145
Number of Sequences: 37544
Number of extensions: 80206
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)