Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   1.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   1.4  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    21   7.4  
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    21   7.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  LVNLLIICSVSCCRNIELFLVLFRLIYRHRFA 114
           L+  +I+ S+S C  + +  V FR    HR A
Sbjct: 310 LIFAMILVSISICVTVVVLNVHFRSPQTHRMA 341


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  LVNLLIICSVSCCRNIELFLVLFRLIYRHRFA 114
           L+  +I+ S+S C  + +  V FR    HR A
Sbjct: 310 LIFAMILVSISICVTVVVLNVHFRSPQTHRMA 341


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 103 VGKLNETIREIVLYYDNTIHYRLL 32
           VG  NE++  +V  YD+ +   LL
Sbjct: 55  VGATNESVLTVVSCYDDYLPNELL 78


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 172 YPNITRYKSFINK 210
           YPNI + K+ IN+
Sbjct: 86  YPNIPKEKALINR 98


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,499
Number of Sequences: 2352
Number of extensions: 3516
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 52
effective length of database: 441,675
effective search space used: 10600200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)