Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137287-1|CAB70679.1| 1397|Homo sapiens hypothetical protein pr...    28   6.1  
AK023306-1|BAB14517.1|  542|Homo sapiens protein ( Homo sapiens ...    28   6.1  
AF117888-1|AAD49195.1| 2548|Homo sapiens myosin-IXa protein.           28   6.1  

>AL137287-1|CAB70679.1| 1397|Homo sapiens hypothetical protein
           protein.
          Length = 1397

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 119 PQAKRCR*IKRNNTRNSSILRQHDTLQIINKLTRHKTND 3
           P+AKR R +K +N    S+  Q+D++QII  ++  K+ D
Sbjct: 679 PKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 717


>AK023306-1|BAB14517.1|  542|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13244 fis, clone OVARC1000679, highly similar to
           Homo sapiens myosin-IXa mRNA. ).
          Length = 542

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 119 PQAKRCR*IKRNNTRNSSILRQHDTLQIINKLTRHKTND 3
           P+AKR R +K +N    S+  Q+D++QII  ++  K+ D
Sbjct: 391 PKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 429


>AF117888-1|AAD49195.1| 2548|Homo sapiens myosin-IXa protein.
          Length = 2548

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 119  PQAKRCR*IKRNNTRNSSILRQHDTLQIINKLTRHKTND 3
            P+AKR R +K +N    S+  Q+D++QII  ++  K+ D
Sbjct: 1830 PKAKRKRSVKISNVALDSMHWQNDSVQIIASVSDLKSMD 1868


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,310,448
Number of Sequences: 237096
Number of extensions: 450444
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 76,859,062
effective HSP length: 55
effective length of database: 63,818,782
effective search space used: 1340194422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)