Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6b05
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   4.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   4.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   4.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   6.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   8.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   8.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   8.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  LIICSVSCCRNIELFLVLFRLI 96
           LI+C+V+ C ++   +V+F ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  LIICSVSCCRNIELFLVLFRLI 96
           LI+C+V+ C ++   +V+F ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVV 390


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  CIVLS*YRTISRIVSFNLPTSFCLWP 122
           C+V S  + + R+VS+    SF ++P
Sbjct: 152 CVVPSFVKDLVRVVSWLQEPSFYIYP 177



 Score = 20.6 bits (41), Expect = 2.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 178 SGINPLTVDTFRNRTRTASGHKQNDVGKLNETIR 77
           +G  PL +D       TA GH  NDV  +   +R
Sbjct: 55  TGSPPLNIDW-----STADGHPVNDVPGVRRVLR 83


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  CIVLS*YRTISRIVSFNLPTSFCLWP 122
           C+V S  + + R+VS+    SF ++P
Sbjct: 152 CVVPSFVKDLVRVVSWLQEPSFYIYP 177



 Score = 20.6 bits (41), Expect = 2.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 178 SGINPLTVDTFRNRTRTASGHKQNDVGKLNETIR 77
           +G  PL +D       TA GH  NDV  +   +R
Sbjct: 55  TGSPPLNIDW-----STADGHPVNDVPGVRRVLR 83


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 64  YYDNTIHYRLLTN*RDTKQT 5
           Y  N IHY  + N  DT+ +
Sbjct: 288 YQQNDIHYEGVQNILDTQSS 307


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  VLCLVNLLIICSVSCCRNIELFLVLFRLIYRHR 108
           +LC  ++L +C++S  R +    V   LIY  R
Sbjct: 120 LLCTASILSLCAISIDRYL---AVTQPLIYSRR 149


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 118 HKQNDVGKLNETIREIV 68
           H++ D+G  ++TI  +V
Sbjct: 585 HREEDLGSESKTINAVV 601


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 118 HKQNDVGKLNETIREIV 68
           H++ D+G  ++TI  +V
Sbjct: 553 HREEDLGSESKTINAVV 569


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 64  YYDNTIHYRLLTN*RDTKQT 5
           Y  N IHY  + N  DT+ +
Sbjct: 288 YQQNDIHYEGVQNILDTQSS 307


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 64  YYDNTIHYRLLTN*RDTKQT 5
           Y  N IHY  + N  DT+ +
Sbjct: 288 YQQNDIHYEGVQNILDTQSS 307


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 163 LTVDTFRNRTRTASGHKQNDVGKLNETIR 77
           LT+  +  R  T S    N + KL +T+R
Sbjct: 511 LTIKEWIERGTTKSMEAANIMSKLPKTVR 539


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 7   FVLCLVNLLIICSVSCC 57
           F + L  L + C V CC
Sbjct: 104 FGIHLCKLWLTCDVLCC 120


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 7   FVLCLVNLLIICSVSCC 57
           F + L  L + C V CC
Sbjct: 104 FGIHLCKLWLTCDVLCC 120


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 7   FVLCLVNLLIICSVSCC 57
           F + L  L + C V CC
Sbjct: 104 FGIHLCKLWLTCDVLCC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,328
Number of Sequences: 438
Number of extensions: 1132
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)