Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6b02
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.46
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 1.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 3.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 5.6
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 26 5.6
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 5.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 7.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.9
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.9
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 9.9
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.9
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 74 KSAAYDPLKAPNYF--EEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSA 235
+ A Y L+APN+F ++ H + + E RR F +L E I K + A
Sbjct: 667 EKAGYHTLRAPNFFYSQQVKHYKQDLFPANSEAARRISFFAQSLAESIPKTSSIDA 722
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.5 bits (58), Expect = 1.8
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Frame = +2
Query: 209 INKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDW 385
I+ + +Y + DL +DE + + GL C +L D K L +
Sbjct: 1973 IHGSDGKDYQYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE- 2022
Query: 386 RRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 535
R + N G+ G TL L +F K N L+NL + M+ DCD
Sbjct: 2023 -RYTVIPLSPNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 23 KKKMNKILFYLFVYAVVKSAAYDPLK-APNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNL 199
K ++++ILF +FV++ + + D + A ++E F + +V+ L+ + H +
Sbjct: 76 KAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSH-V 134
Query: 200 NEIINKNQNDSAKYEINKFSDLSKD 274
E Q KY+++ FS ++ D
Sbjct: 135 AEDRTAQQYRQNKYQLH-FSRITFD 158
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/106 (20%), Positives = 43/106 (40%)
Frame = +2
Query: 17 YVKKKMNKILFYLFVYAVVKSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHN 196
Y + +KI + +K A D LK N + + +NK + EK++ + +
Sbjct: 915 YPSEHTSKIEYLEKTIEDLKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSI 974
Query: 197 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCK 334
L + + +++ Y+ N D ++ E K L +F K
Sbjct: 975 LIDELESYRSNQFNYQNNLVQDKNELEERLKEIQKELEVYNNHFMK 1020
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 197 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQP 355
L++++ K + + E++ +S D+ I + + LP+ N K D+P
Sbjct: 294 LSDLVEKQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPESTDRP 346
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 223 LVFIDNFI*IVLENFESSQFFNFATIIFVESMNKFFKIIRRFQRIVG 83
+V + N I E E + F F+ESMN+ FK I +++VG
Sbjct: 54 VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVG 100
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 274 VFGQIREFVYFIFGRIVLVFIDNF 203
+FG I +FVY+ + VLV DNF
Sbjct: 1027 IFGVIGKFVYWAYVAPVLVSPDNF 1050
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 92 PLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIIN 214
P K +YF + KN SS+++ ++Q NE+ N
Sbjct: 323 PSKIQDYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKN 363
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 429 HIP*FFTLVTLLRRRQSNSRGPLPGGWSKSMT 334
H+ + L +R++ + +GPLP GW ++
Sbjct: 222 HLLEHYPLALSVRQQVAVEKGPLPAGWEMRLS 253
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 158 VEKLRRFKIFQHNLNEIINKNQNDSAKYEINKFSDL-SKDETIAKYTGLSLPTQTQN 325
V R ++F H+LNE +KN++ + ++ +L S D+ ++ + LS + N
Sbjct: 119 VNNYSRSQLFNHSLNE--SKNRDLTEQHPFVTLDELNSNDQVLSSFGDLSSTFEMPN 173
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 579 SKPSLKWAAYSW 614
SKPSLKW A W
Sbjct: 381 SKPSLKWLATKW 392
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 411 TLVTLLRRRQSNSRGPLPGGWSKSMT 334
T+ +L++ + + GPLP GW +T
Sbjct: 350 TVGSLMQPQSLSHLGPLPSGWEMRLT 375
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 152 SEVEKLRRFKIFQHNLNEIINKNQN-DSAKYEINKFSDLSK 271
S +EKLR+ ++Q I+N N D KY ++ S L+K
Sbjct: 134 SNIEKLRKL-VYQLTNISILNSLDNLDKVKYLLHDSSSLTK 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,754
Number of Sequences: 5004
Number of extensions: 54397
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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