Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a17
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   1.3  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.9  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    26   6.7  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   8.9  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   8.9  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 404 EVKSPTTSLSTGLILHIHTTERSTTDTPRKVDITSEL 514
           E K+PT    + LI+H+H+   ST ++       SEL
Sbjct: 262 EKKTPTRGFPSTLIIHVHSLNLSTAESHDLESTDSEL 298


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 71  KNTTSKTLKKDGISYFRFPRDPIRCGEWTSIVSQERRQDFFK 196
           K  T++ L++D + +  F        E+ + VSQ+R   FFK
Sbjct: 185 KEFTNRNLREDFLLHISFASSLTNEDEYQNWVSQDRESHFFK 226


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 173 ERRQDFFKPNSSNVVCSEHFL-DKDMYVSAKGIKRLLKTAVPSVP 304
           ER  D FK N  N   S+  L D++  V+   +K LLK+ VPS P
Sbjct: 153 ERMADCFKLN--NKKNSQKLLEDEEFAVTEALMKSLLKSRVPSKP 195


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +2

Query: 338  IPDDGGDTEVCRTCSMSDVENKEVKSPTTSLSTGLILHIHTTERSTTDTPRKVDITSELH 517
            + +DG D++   T S+SD ++K+V+    S       H +    STT     VD+TS + 
Sbjct: 788  VSEDGADSD---TISVSDDKDKKVEGHRPSQDPTFSHHEYYPVISTTYPFFHVDVTSAVV 844

Query: 518  KFRRRLI----SKDKLINN 562
              + R +     K K++ N
Sbjct: 845  DIQYRHVLDVNYKPKIVTN 863


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  MRNCKNTTSKTLKKDGISYFRFPRD 133
           +++C+ T   T +   + YF FP D
Sbjct: 346 LKSCEKTRGNTAEISNLGYFSFPAD 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,439
Number of Sequences: 5004
Number of extensions: 62847
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)