Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a17
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    31   1.0  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    28   9.3  

>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
 Frame = +2

Query: 59  MRNCKNTTSKTLKKD--GISYFRFPRDPIRCGEWTSIVSQE---RRQDFFKPNSSNVVCS 223
           +  C   +   LKK+   +   RF RDP  C  W S +S +          PN      S
Sbjct: 2   VEGCVGPSELHLKKELTALRKARFLRDPETCSSWRSPLSSKSFMTTSCVINPNEIGSNVS 61

Query: 224 EHFLDKDMYVSAKGIKRLLKTAVPSVPDISAQDLEF-IEIPDDGGDTEVCRTCSMSDVEN 400
           +  ++       KG K+  K  + +    S +  E  I++ DD  D +    CS+   E+
Sbjct: 62  QKHIE-PAAAPPKGEKKRKKVYLYNWRHHSNKSSESGIKLDDD--DRQASADCSL---ES 115

Query: 401 KEVKSPTTSLS-TGL--ILHIHTTERSTTDTPRKVDITSELHKFRRRLISKDKLINN 562
             + +   S S TGL   + I++ + S + TP    +T  + + RR  +SK   I N
Sbjct: 116 PCISNGVDSRSETGLEVPVSIYSVQGSNSGTP----VTRTVRRVRRSSLSKKGAIRN 168


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 332 IEIPDDGGDTEVCRTCSMSDVENKEVKSPTTSLSTGLILHIHTTERS 472
           ++  DD GD+   +   +SD  +   KS T+SLST +  ++   +R+
Sbjct: 370 VDTDDDEGDSPSTKKIKLSDDASLPKKSRTSSLSTKITKNLLQPDRA 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,974
Number of Sequences: 37544
Number of extensions: 359129
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)