Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6a17
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.44 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.58 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +2

Query: 227 HFLDKDMYVSAKGIKRLLKTAVPSVPDISAQDLEFIEIPDDGGDTEVCRTCSM------- 385
           H  D++ + S   I   + T + S P I A ++  I        T     CSM       
Sbjct: 235 HTTDENRHSSTLDIDHKMLTPIKSEP-IDAYEMHQISKKKLSPATPKGSKCSMITTPEIK 293

Query: 386 SDVENKEVKSPTTSLSTGLILHIHTTERSTTDTPRKVDITS 508
            +VE+ E     T LSTG+   I        +  +K+D+ S
Sbjct: 294 KEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDS 334


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 753 EDSIKIVKLCSKLIIVLLSERKY 685
           ED I ++K CS  +++L   RKY
Sbjct: 405 EDQIALLKACSSEVMMLRMARKY 427


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 146 RIVLGHEENENTISHP 99
           RI   HEENE+   HP
Sbjct: 376 RIFSPHEENESVDKHP 391


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 154 PFSASYWVTRKTKIRYPILF 95
           P   + W+ R+++I +P+ F
Sbjct: 437 PQEIAQWIDRRSRIVFPVAF 456


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 125 PRDPIRCGEWT 157
           P  PIR GEWT
Sbjct: 377 PPPPIRGGEWT 387


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 SQISYYIPEYRLNFTY 453
           S IS+Y+P + + FTY
Sbjct: 211 STISFYLPLFVMVFTY 226


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 134 PIRCGEWTSIVSQERR 181
           P  CG+W+S  S+ RR
Sbjct: 364 PNCCGKWSSQKSEPRR 379


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 720 KLIIVLLSERKYIFWVGHVIV 658
           K+ I+   E+KY  W+G  I+
Sbjct: 101 KIKIIAPPEKKYSVWIGGSIL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,855
Number of Sequences: 438
Number of extensions: 4652
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)